Aliases for ENSG00000261604 Gene

Subcategory (RNA class) for ENSG00000261604 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261604 Gene

  • Novel Transcript, Antisense To HMGCS1 5
  • NONHSAG040308.2 91
  • HSALNG0041501 164
  • Lnc-NIM1K-1 165
  • AC114947.2 5

External Ids for ENSG00000261604 Gene

Previous GeneCards Identifiers for ENSG00000261604 Gene

  • GC05P043288

Summaries for ENSG00000261604 Gene

GeneCards Summary for ENSG00000261604 Gene

ENSG00000261604 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261604 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261604 Gene

Genomics for ENSG00000261604 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261604 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J043310 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 5.4 +24.6 24603 6.8 BRCA1 SP1 CREB1 GATAD2A ZBTB33 ATF7 TEAD4 PRDM10 REST ZNF629 HMGCS1 ZNF131 TMEM267 PAIP1 RPL29P12 ENSG00000249492 EEF1A1P19 SERBP1P6 NNT ENSG00000261604
GH05J043337 Enhancer 0.5 Ensembl 5.1 +51.1 51100 1.4 ZNF189 SPI1 ATF4 CEBPG ATF3 POLR2A MAX TRIM24 NNT ENSG00000261604 ENSG00000188850 lnc-NIM1K-5 piR-39341-290 HMGCS1 CCL28 RF00017-4604
GH05J043316 Enhancer 0.2 Ensembl 5.6 +29.4 29400 0.4 NONHSAG040311.2 piR-32813-012 ENSG00000261604 HMGCS1 piR-52324-053 CCL28 RF00017-4604
GH05J043281 Enhancer 0.8 Ensembl ENCODE 0.4 -5.5 -5500 1.1 PKNOX1 ZNF24 DPF2 SOX6 ARID3A NFE2 ZNF316 FOSL1 MAFG CTCF HMGCS1 NNT ENSG00000261604 TUBAP14 NIM1K RF00017-4604
GH05J043274 Enhancer 0.7 Ensembl 0.4 -13.3 -13333 1.3 PKNOX1 MTA1 SP1 HDAC1 MTA3 EHMT2 NFIC MYNN GATA3 TAL1 HMGCS1 NNT ENSG00000261604 TUBAP14 NIM1K RF00017-4604
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261604 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261604 Gene

Genomic Locations for ENSG00000261604 Gene
chr5:43,287,601-43,290,839
(GRCh38/hg38)
Size:
3,239 bases
Orientation:
Plus strand
chr5:43,287,703-43,290,941
(GRCh37/hg19)
Size:
3,239 bases
Orientation:
Plus strand

Genomic View for ENSG00000261604 Gene

Genes around ENSG00000261604 on UCSC Golden Path with GeneCards custom track
ENSG00000261604 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261604 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261604 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261604 Gene

Proteins for ENSG00000261604 Gene

Post-translational modifications for ENSG00000261604 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261604 Gene

Domains & Families for ENSG00000261604 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261604 Gene

Function for ENSG00000261604 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261604 Gene

Localization for ENSG00000261604 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261604 Gene

Pathways & Interactions for ENSG00000261604 Gene

PathCards logo

SuperPathways for ENSG00000261604 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261604 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261604 Gene

Drugs & Compounds for ENSG00000261604 Gene

No Compound Related Data Available

Transcripts for ENSG00000261604 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261604 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004B9B6C_9606 lncRNA 643 4

Ensembl: ENST00000569313 (view in UCSC) ,

LncBook: HSALNT0087250,

LNCipedia: lnc-NIM1K-1:2,

NONCODE: NONHSAT101305.2,

URS00001E98B7_9606 lncRNA 2125 3

Ensembl: ENST00000565748 (view in UCSC) ,

LNCipedia: lnc-NIM1K-1:1,

NONCODE: NONHSAT101303.2,

ENSG00000261604 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261604 Gene

No ASD Table

Relevant External Links for ENSG00000261604 Gene

GeneLoc Exon Structure for
ENSG00000261604

No data available for mRNA/cDNA for ENSG00000261604 Gene

Expression for ENSG00000261604 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261604 Gene

genes like me logo Genes that share expression patterns with ENSG00000261604: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261604 Gene

Orthologs for ENSG00000261604 Gene

Evolution for ENSG00000261604 Gene

ENSEMBL:
Gene Tree for ENSG00000261604 (if available)
TreeFam:
Gene Tree for ENSG00000261604 (if available)

No data available for Orthologs for ENSG00000261604 Gene

Paralogs for ENSG00000261604 Gene

No data available for Paralogs for ENSG00000261604 Gene

Variants for ENSG00000261604 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261604 Gene

Disorders for ENSG00000261604 Gene

Additional Disease Information for ENSG00000261604

No disorders were found for ENSG00000261604 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261604 Gene

Publications for ENSG00000261604 Gene

No publications were found for ENSG00000261604 Gene.

No data available for Mastermind for ENSG00000261604 Gene

Products for ENSG00000261604 Gene

Sources for ENSG00000261604 Gene