Aliases for ENSG00000261586 Gene

Subcategory (RNA class) for ENSG00000261586 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000261586 Gene

  • Novel Transcript 5
  • HSALNG0091107 169
  • Lnc-SCN8A-2 170
  • AC068987.4 5

External Ids for ENSG00000261586 Gene

Previous GeneCards Identifiers for ENSG00000261586 Gene

  • GC12P052211

Summaries for ENSG00000261586 Gene

GeneCards Summary for ENSG00000261586 Gene

ENSG00000261586 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261586 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261586 Gene

Genomics for ENSG00000261586 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261586 Gene

Promoters and enhancers for ENSG00000261586 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J051816 Enhancer 0.4 ENCODE 750.6 -0.5 -548 0.9 MAFK NRF1 GATA3 ENSG00000261586 lnc-KRT80-15 SCN8A ENSG00000260473
GH12J051818 Enhancer 0.3 ENCODE 750.6 +1.2 1203 0.1 POLR2A NFIC ENSG00000261586 lnc-KRT80-15 ENSG00000260473 piR-45035-043 FIGNL2
GH12J051846 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.2 +30.5 30509 4 NCOA6 ZSCAN21 GLIS2 ZIC2 PKNOX1 ZBTB8A ZEB2 ZNF148 PATZ1 SP2 FIGNL2 FIGNL2-DT lnc-KRT80-14 lnc-KRT80-5 SLC4A8 ACVRL1 HNRNPA3P10 ENSG00000261586 TFCP2 RNU6-574P
GH12J052041 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.3 +226.5 226530 6.8 RBPJ ZNF148 SP1 MAFK MLLT1 ZNF687 IKZF1 REST IKZF2 ZNF143 NR4A1 OR7E47P ENSG00000261586 GRASP ACVR1B HSALNG0091142 NONHSAG011177.2 lnc-KRT80-8-001
GH12J051868 Enhancer 0.7 ENCODE CraniofacialAtlas 5.1 +51.7 51655 1.7 L3MBTL2 EGR1 MGA MTA3 CTBP1 POLR2A SKIL VEZF1 NRF1 ENSG00000261586 ANKRD33 HSALNG0091113 HSALNG0091112
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261586 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261586 Gene

Genomic Locations for ENSG00000261586 Gene
chr12:51,817,899-51,820,150
(GRCh38/hg38)
Size:
2,252 bases
Orientation:
Plus strand
chr12:52,211,683-52,213,934
(GRCh37/hg19)
Size:
2,252 bases
Orientation:
Plus strand

Genomic View for ENSG00000261586 Gene

Genes around ENSG00000261586 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261586 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261586 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261586 Gene

Proteins for ENSG00000261586 Gene

Post-translational modifications for ENSG00000261586 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261586 Gene

Domains & Families for ENSG00000261586 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261586 Gene

Function for ENSG00000261586 Gene

Phenotypes From GWAS Catalog for ENSG00000261586 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261586 Gene

Localization for ENSG00000261586 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261586 Gene

Pathways & Interactions for ENSG00000261586 Gene

PathCards logo

SuperPathways for ENSG00000261586 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261586 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000261586 Gene

Drugs & Compounds for ENSG00000261586 Gene

No Compound Related Data Available

Transcripts for ENSG00000261586 Gene

mRNA/cDNA for ENSG00000261586 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261586 Gene

No ASD Table

Relevant External Links for ENSG00000261586 Gene

GeneLoc Exon Structure for
ENSG00000261586

Expression for ENSG00000261586 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000261586 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261586 Gene

This gene is overexpressed in Kidney - Cortex (x8.1) and Brain - Cerebellum (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000261586: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261586 Gene

Orthologs for ENSG00000261586 Gene

Evolution for ENSG00000261586 Gene

ENSEMBL:
Gene Tree for ENSG00000261586 (if available)
TreeFam:
Gene Tree for ENSG00000261586 (if available)

No data available for Orthologs for ENSG00000261586 Gene

Paralogs for ENSG00000261586 Gene

No data available for Paralogs for ENSG00000261586 Gene

Variants for ENSG00000261586 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261586 Gene

Disorders for ENSG00000261586 Gene

No disorders were found for ENSG00000261586 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261586 Gene

Publications for ENSG00000261586 Gene

No publications were found for ENSG00000261586 Gene.

No data available for External Links for ENSG00000261586 Gene

Products for ENSG00000261586 Gene

Sources for ENSG00000261586 Gene