Aliases for ENSG00000261578 Gene

Subcategory (RNA class) for ENSG00000261578 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000261578 Gene

  • Novel Transcript, Overlapping To TSKU 5
  • NONHSAG009142 94
  • AP003119.3 5
  • Lnc-TSKU-1 170

External Ids for ENSG00000261578 Gene

Previous GeneCards Identifiers for ENSG00000261578 Gene

  • GC11P076511

Summaries for ENSG00000261578 Gene

GeneCards Summary for ENSG00000261578 Gene

ENSG00000261578 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261578 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261578 Gene

Genomics for ENSG00000261578 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261578 Gene

Promoters and enhancers for ENSG00000261578 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J076798 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 756.1 -1.3 -1303 1.8 FOXA1 RBPJ MYC ELF1 HLF L3MBTL2 MAX ZNF121 RAD21 CTCF ENSG00000261578 ENSG00000254632 ACER3 piR-32023-046
GH11J076801 Enhancer 0.6 dbSUPER 756.6 +1.0 1016 1 FOXA1 USF2 ZBTB33 SP1 TFE3 ELF1 RXRA PRDM10 NFKBIZ SOX13 ENSG00000261578 LOC101928837 ACER3 piR-55657-054
GH11J076800 Enhancer 0.4 ENCODE dbSUPER 750.6 +0.4 408 0.2 HNF4A ENSG00000261578 ACER3 piR-55657-054
GH11J076379 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 12.5 -419.2 -419163 4 SIN3A ZNF24 ZBTB40 CTCF ZBTB6 FOXA1 MLX RBPJ POLR2A HCFC1 THAP12 GVQW3 lnc-EMSY-1 TSKU RPS3 EMSY ENSG00000261578 SNORD15B ENSG00000255363 LOC101928837
GH11J076786 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 15.9 -11.7 -11714 4.1 SREBF1 SMARCE1 TCF7L2 ZNF217 RUNX1 L3MBTL2 DACH1 ZNF121 MNT MTA3 lnc-ACER3-1 LOC101928837 ENSG00000254632 ENSG00000261578 TSKU GVQW3 piR-32023-046
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261578 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261578 Gene

Genomic Locations for ENSG00000261578 Gene
chr11:76,800,364-76,804,555
(GRCh38/hg38)
Size:
4,192 bases
Orientation:
Plus strand
chr11:76,511,408-76,515,599
(GRCh37/hg19)
Size:
4,192 bases
Orientation:
Plus strand

Genomic View for ENSG00000261578 Gene

Genes around ENSG00000261578 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261578 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261578 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261578 Gene

Proteins for ENSG00000261578 Gene

Post-translational modifications for ENSG00000261578 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261578 Gene

Domains & Families for ENSG00000261578 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261578 Gene

Function for ENSG00000261578 Gene

Phenotypes From GWAS Catalog for ENSG00000261578 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261578 Gene

Localization for ENSG00000261578 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261578 Gene

Pathways & Interactions for ENSG00000261578 Gene

PathCards logo

SuperPathways for ENSG00000261578 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261578 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000261578 Gene

Drugs & Compounds for ENSG00000261578 Gene

No Compound Related Data Available

Transcripts for ENSG00000261578 Gene

mRNA/cDNA for ENSG00000261578 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261578 Gene

No ASD Table

Relevant External Links for ENSG00000261578 Gene

GeneLoc Exon Structure for
ENSG00000261578

Expression for ENSG00000261578 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000261578 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261578 Gene

This gene is overexpressed in Kidney - Cortex (x7.8) and Liver (x5.4).
genes like me logo Genes that share expression patterns with ENSG00000261578: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261578 Gene

Orthologs for ENSG00000261578 Gene

Evolution for ENSG00000261578 Gene

ENSEMBL:
Gene Tree for ENSG00000261578 (if available)
TreeFam:
Gene Tree for ENSG00000261578 (if available)

No data available for Orthologs for ENSG00000261578 Gene

Paralogs for ENSG00000261578 Gene

No data available for Paralogs for ENSG00000261578 Gene

Variants for ENSG00000261578 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261578 Gene

Disorders for ENSG00000261578 Gene

No disorders were found for ENSG00000261578 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261578 Gene

Publications for ENSG00000261578 Gene

No publications were found for ENSG00000261578 Gene.

No data available for External Links for ENSG00000261578 Gene

Products for ENSG00000261578 Gene

Sources for ENSG00000261578 Gene