Aliases for ENSG00000261546 Gene

Subcategory (RNA class) for ENSG00000261546 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000261546 Gene

  • Novel Transcript, Antisense To ACSF3 5
  • NONHSAG020321.2 91
  • Lnc-SLC22A31-2 165
  • AC135782.3 5

External Ids for ENSG00000261546 Gene

Previous GeneCards Identifiers for ENSG00000261546 Gene

  • GC16M089179

Summaries for ENSG00000261546 Gene

GeneCards Summary for ENSG00000261546 Gene

ENSG00000261546 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261546 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261546 Gene

Genomics for ENSG00000261546 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261546 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J089112 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.2 -3160 11.3 CREB1 GATAD2A ZBTB33 TEAD4 IKZF1 NFRKB POLR2A BACH1 TARDBP LARP7 ACSF3 GALNS TRAPPC2L RNF166 TUBB3 CYBA SNAI3 ENSG00000259877 LOC105371414 SLC22A31
GH16J089093 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +17.0 16961 11.4 SP1 HNRNPL SIX5 ZNF692 BACH1 JUND FOXA1 LARP7 DDX20 ZNF143 ACSF3 CDK10 CBFA2T3 LOC100129697 LINC02138 CDH15 PABPN1L ENSG00000259877 GAS8 SLC22A31
GH16J089104 Enhancer 0.9 ENCODE dbSUPER 0.4 +9.9 9922 0.9 RELA ZIC2 DPF2 RELB RUNX3 CTBP1 TCF12 KLF4 ZNF217 BCL11A ACSF3 LINC02138 CDH15 ENSG00000261546 piR-58082
GH16J089105 Enhancer 0.8 ENCODE dbSUPER 0.4 +9.4 9371 0.2 CTBP1 KLF4 PKNOX1 ZNF217 MBD2 SIN3A IKZF1 KLF9 DPF2 CTCF LINC02138 CDH15 ENSG00000261546 piR-58082 ACSF3
GH16J089124 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 -9.2 -9188 0.7 POLR2A NFATC1 ACSF3 CDK10 GALNS TRAPPC2L ENSG00000261546 LINC00304 CDH15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261546 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261546 Gene

Genomic Locations for ENSG00000261546 Gene
chr16:89,113,175-89,115,279
(GRCh38/hg38)
Size:
2,105 bases
Orientation:
Minus strand
chr16:89,179,583-89,181,687
(GRCh37/hg19)
Size:
2,105 bases
Orientation:
Minus strand

Genomic View for ENSG00000261546 Gene

Genes around ENSG00000261546 on UCSC Golden Path with GeneCards custom track
ENSG00000261546 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261546 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261546 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261546 Gene

Proteins for ENSG00000261546 Gene

Post-translational modifications for ENSG00000261546 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261546 Gene

Domains & Families for ENSG00000261546 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261546 Gene

Function for ENSG00000261546 Gene

Phenotypes From GWAS Catalog for ENSG00000261546 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261546 Gene

Localization for ENSG00000261546 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261546 Gene

Pathways & Interactions for ENSG00000261546 Gene

PathCards logo

SuperPathways for ENSG00000261546 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261546 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261546 Gene

Drugs & Compounds for ENSG00000261546 Gene

No Compound Related Data Available

Transcripts for ENSG00000261546 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261546 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000536144_9606 lncRNA 2105 3

Ensembl: ENST00000562782 (view in UCSC) ,

LNCipedia: lnc-SLC22A31-2:1,

NONCODE: NONHSAT144464.2,

ENSG00000261546 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261546 Gene

No ASD Table

Relevant External Links for ENSG00000261546 Gene

GeneLoc Exon Structure for
ENSG00000261546

No data available for mRNA/cDNA for ENSG00000261546 Gene

Expression for ENSG00000261546 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261546 Gene

genes like me logo Genes that share expression patterns with ENSG00000261546: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261546 Gene

Orthologs for ENSG00000261546 Gene

Evolution for ENSG00000261546 Gene

ENSEMBL:
Gene Tree for ENSG00000261546 (if available)
TreeFam:
Gene Tree for ENSG00000261546 (if available)

No data available for Orthologs for ENSG00000261546 Gene

Paralogs for ENSG00000261546 Gene

No data available for Paralogs for ENSG00000261546 Gene

Variants for ENSG00000261546 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261546 Gene

Disorders for ENSG00000261546 Gene

No disorders were found for ENSG00000261546 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261546 Gene

Publications for ENSG00000261546 Gene

No publications were found for ENSG00000261546 Gene.

No data available for Mastermind for ENSG00000261546 Gene

Products for ENSG00000261546 Gene

Sources for ENSG00000261546 Gene