Aliases for ENSG00000261546 Gene

Subcategory (RNA class) for ENSG00000261546 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000261546 Gene

  • Novel Transcript, Antisense To ACSF3 5
  • Lnc-SLC22A31-2 170
  • NONHSAG020321 94
  • AC135782.3 5

External Ids for ENSG00000261546 Gene

Previous GeneCards Identifiers for ENSG00000261546 Gene

  • GC16M089179

Summaries for ENSG00000261546 Gene

GeneCards Summary for ENSG00000261546 Gene

ENSG00000261546 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261546 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261546 Gene

Genomics for ENSG00000261546 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261546 Gene

Promoters and enhancers for ENSG00000261546 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J089112 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.6 -3.2 -3160 11.3 ZBTB40 SREBF1 MLX RBPJ HDAC2 NR2F1 NR2F6 HCFC1 MYC ETV6 ACSF3 GALNS TRAPPC2L RNF166 TUBB3 CYBA SNAI3 ENSG00000259877 ENSG00000260279 SLC22A31
GH16J089093 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +17.0 16961 11.4 ZNF24 SP1 ZBTB40 SREBF1 SIX5 SMARCE1 POLR2A NR2F6 HCFC1 MYC ACSF3 APRT SNORD68 RPL13 CDK10 ENSG00000260121 TRAPPC2L CBFA2T3 LOC100129697 LINC02138
GH16J089104 Enhancer 0.9 ENCODE dbSUPER 0.4 +9.9 9922 0.9 RELA MNT NCOA3 CREM IKZF1 CREB1 ZIC2 IKZF2 CTBP1 DPF2 ACSF3 LINC02138 CDH15 ENSG00000261546 piR-58082
GH16J089105 Enhancer 0.8 ENCODE dbSUPER 0.4 +9.4 9371 0.2 MNT NCOA3 CREB1 CTBP1 KLF4 PKNOX1 IKZF1 DPF2 ZNF217 SIN3A LINC02138 CDH15 ENSG00000261546 piR-58082 ACSF3
GH16J089124 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 -9.2 -9188 0.7 NFATC1 ACSF3 CDK10 GALNS TRAPPC2L ENSG00000261546 LINC00304
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261546 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261546 Gene

Genomic Locations for ENSG00000261546 Gene
chr16:89,113,175-89,115,279
(GRCh38/hg38)
Size:
2,105 bases
Orientation:
Minus strand
chr16:89,179,583-89,181,687
(GRCh37/hg19)
Size:
2,105 bases
Orientation:
Minus strand

Genomic View for ENSG00000261546 Gene

Genes around ENSG00000261546 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261546 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261546 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261546 Gene

Proteins for ENSG00000261546 Gene

Post-translational modifications for ENSG00000261546 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261546 Gene

Domains & Families for ENSG00000261546 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261546 Gene

Function for ENSG00000261546 Gene

Phenotypes From GWAS Catalog for ENSG00000261546 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261546 Gene

Localization for ENSG00000261546 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261546 Gene

Pathways & Interactions for ENSG00000261546 Gene

PathCards logo

SuperPathways for ENSG00000261546 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261546 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000261546 Gene

Drugs & Compounds for ENSG00000261546 Gene

No Compound Related Data Available

Transcripts for ENSG00000261546 Gene

mRNA/cDNA for ENSG00000261546 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261546 Gene

No ASD Table

Relevant External Links for ENSG00000261546 Gene

GeneLoc Exon Structure for
ENSG00000261546

Expression for ENSG00000261546 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000261546 Gene

genes like me logo Genes that share expression patterns with ENSG00000261546: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261546 Gene

Orthologs for ENSG00000261546 Gene

Evolution for ENSG00000261546 Gene

ENSEMBL:
Gene Tree for ENSG00000261546 (if available)
TreeFam:
Gene Tree for ENSG00000261546 (if available)

No data available for Orthologs for ENSG00000261546 Gene

Paralogs for ENSG00000261546 Gene

No data available for Paralogs for ENSG00000261546 Gene

Variants for ENSG00000261546 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261546 Gene

Disorders for ENSG00000261546 Gene

No disorders were found for ENSG00000261546 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261546 Gene

Publications for ENSG00000261546 Gene

No publications were found for ENSG00000261546 Gene.

No data available for External Links for ENSG00000261546 Gene

Products for ENSG00000261546 Gene

Sources for ENSG00000261546 Gene