Aliases for ENSG00000261538 Gene

Subcategory (RNA class) for ENSG00000261538 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261538 Gene

  • Novel Transcript, Sense Overlapping ABCC11 5
  • NONHSAG019370.2 91
  • HSALNG0111228 164
  • Lnc-ABCC11-1 165
  • AC096996.2 5

External Ids for ENSG00000261538 Gene

Summaries for ENSG00000261538 Gene

GeneCards Summary for ENSG00000261538 Gene

ENSG00000261538 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261538 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261538 Gene

Genomics for ENSG00000261538 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261538 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J048164 Promoter/Enhancer 1.3 Ensembl ENCODE 600.7 +1.6 1555 1.6 GATAD2A CTCF PRDM10 TFE3 NFKBIZ ZNF692 RCOR2 FOXA1 ZNF143 ZIC2 ENSG00000261538 piR-47675-045 LONP2 ABCC12 ABCC11
GH16J048605 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.9 -442.7 -442679 9 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 ZNF512 SIX5 N4BP1 lnc-LONP2-9 ENSG00000260052 ENSG00000261267 ENSG00000261538 SIAH1 LONP2
GH16J048582 Enhancer 0.8 Ensembl ENCODE 5.4 -420.5 -420462 9.8 CEBPB EGR1 JUND NFIC NR2F2 HNF4A RXRA NFIA KDM1A MAX N4BP1 ENSG00000260052 ENSG00000261267 ENSG00000261538 RPS2P44 LOC105371239 SIAH1
GH16J048188 Enhancer 1 Ensembl ENCODE 0.4 -20.8 -20763 4.4 SP1 GATAD2A TFE3 SOX13 RCOR2 BACH1 JUND RELA RXRB TCF12 LONP2 HSALNG0111229 ENSG00000261538 ABCC12 ABCC11
GH16J048203 Enhancer 1.1 Ensembl ENCODE 0.3 -37.6 -37552 2 HNRNPL GATAD2A ATF7 REST TFE3 SOX13 NFKBIZ RCOR2 RBFOX2 RXRB LONP2 ABCC11 HSALNG0111229 ENSG00000261538 ABCC12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261538 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261538 Gene

Genomic Locations for ENSG00000261538 Gene
chr16:48,164,952-48,167,238
(GRCh38/hg38)
Size:
2,287 bases
Orientation:
Minus strand
chr16:48,198,863-48,201,149
(GRCh37/hg19)
Size:
2,287 bases
Orientation:
Minus strand

Genomic View for ENSG00000261538 Gene

Genes around ENSG00000261538 on UCSC Golden Path with GeneCards custom track
ENSG00000261538 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261538 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261538 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261538 Gene

Proteins for ENSG00000261538 Gene

Post-translational modifications for ENSG00000261538 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261538 Gene

Domains & Families for ENSG00000261538 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261538 Gene

Function for ENSG00000261538 Gene

Phenotypes From GWAS Catalog for ENSG00000261538 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261538 Gene

Localization for ENSG00000261538 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261538 Gene

Pathways & Interactions for ENSG00000261538 Gene

PathCards logo

SuperPathways for ENSG00000261538 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261538 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261538 Gene

Drugs & Compounds for ENSG00000261538 Gene

No Compound Related Data Available

Transcripts for ENSG00000261538 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261538 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000011F070_9606 lncRNA 426 4

Ensembl: ENST00000563906 (view in UCSC) ,

LncBook: HSALNT0230527,

LNCipedia: lnc-ABCC11-1:1,

NONCODE: NONHSAT142316.2,

ENSG00000261538 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261538 Gene

No ASD Table

Relevant External Links for ENSG00000261538 Gene

GeneLoc Exon Structure for
ENSG00000261538

No data available for mRNA/cDNA for ENSG00000261538 Gene

Expression for ENSG00000261538 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261538 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261538 Gene

This gene is overexpressed in Liver (x15.7), Testis (x12.3), Breast - Mammary Tissue (x11.2), and Prostate (x6.0).
genes like me logo Genes that share expression patterns with ENSG00000261538: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261538 Gene

Orthologs for ENSG00000261538 Gene

Evolution for ENSG00000261538 Gene

ENSEMBL:
Gene Tree for ENSG00000261538 (if available)
TreeFam:
Gene Tree for ENSG00000261538 (if available)

No data available for Orthologs for ENSG00000261538 Gene

Paralogs for ENSG00000261538 Gene

No data available for Paralogs for ENSG00000261538 Gene

Variants for ENSG00000261538 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261538 Gene

Disorders for ENSG00000261538 Gene

Additional Disease Information for ENSG00000261538

No disorders were found for ENSG00000261538 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261538 Gene

Publications for ENSG00000261538 Gene

No publications were found for ENSG00000261538 Gene.

No data available for Mastermind for ENSG00000261538 Gene

Products for ENSG00000261538 Gene

Sources for ENSG00000261538 Gene