ENSG00000261481 Gene (RNA Gene)

 

GC16P008869
GIFtS:
7
See more...

Aliases for ENSG00000261481 Gene

Subcategory (RNA class) for ENSG00000261481 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261481 Gene

  • Novel Transcript, Antisense To CARHSP1 5
  • NONHSAG018526.2 91
  • HSALNG0109429 164
  • AC022167.4 5
  • Lnc-PMM2-3 165

External Ids for ENSG00000261481 Gene

Previous GeneCards Identifiers for ENSG00000261481 Gene

  • GC16P008963

Summaries for ENSG00000261481 Gene

GeneCards Summary for ENSG00000261481 Gene

ENSG00000261481 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261481 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261481 Gene

Genomics for ENSG00000261481 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000261481 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J008858 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.7 -4674 11.2 HNRNPL CREB1 GATAD2A ZBTB33 TEAD4 PRDM10 REST ZNF629 TFE3 ZNF512 CARHSP1 ENSG00000260276 USP7 PMM2 ENSG00000260349 ENSG00000261481 lnc-USP7-3 MN297349 LOC100130283 TMEM186
GH16J008870 Enhancer 1.1 ENCODE dbSUPER 0.7 +2.2 2196 1.6 GATAD2A PRDM10 ZNF629 LEF1 RCOR2 JUND PKNOX1 RXRB MTA1 IRF2 USP7 ENSG00000260349 CARHSP1 ENSG00000261481 LITAFD
GH16J008873 Enhancer 0.8 dbSUPER 0.7 +4.4 4355 0.7 GATAD2A CTCF TFE3 RXRB IRF2 CEBPA KMT2B CEBPB ZBTB26 ZKSCAN8 CARHSP1 ENSG00000261481 LITAFD
GH16J008877 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +9.3 9277 2.6 CEBPG GATAD2A ZNF629 IKZF1 PATZ1 CEBPA CEBPB SP1 SMARCC1 ZKSCAN8 LITAFD CARHSP1 ENSG00000261481 HSALNG0109430
GH16J008881 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +11.1 11149 0.8 HNRNPL GATAD2A CTCF ZNF143 REST RAD21 TRIM22 GABPA YY1 MTA3 LITAFD HSALNG0109430 ENSG00000261481 CARHSP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261481 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261481 Gene

Genomic Locations for ENSG00000261481 Gene
chr16:8,869,251-8,870,032
(GRCh38/hg38)
Size:
782 bases
Orientation:
Plus strand
chr16:8,963,108-8,963,889
(GRCh37/hg19)
Size:
782 bases
Orientation:
Plus strand

Genomic View for ENSG00000261481 Gene

Genes around ENSG00000261481 on UCSC Golden Path with GeneCards custom track
ENSG00000261481 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261481 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261481 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000261481 Gene

Proteins for ENSG00000261481 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000261481 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261481 Gene

Domains & Families for ENSG00000261481 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261481 Gene

Function for ENSG00000261481 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000261481 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261481 Gene

Localization for ENSG00000261481 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261481 Gene

Pathways & Interactions for ENSG00000261481 Gene

PathCards logo

SuperPathways for ENSG00000261481 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261481 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261481 Gene

Drugs & Compounds for ENSG00000261481 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000261481 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261481 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002AD539_9606 lncRNA 498 4

Ensembl: ENST00000570290 (view in UCSC) ,

LncBook: HSALNT0227436,

LNCipedia: lnc-PMM2-3:1,

NONCODE: NONHSAT140429.2,

ENSG00000261481 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261481 Gene

No ASD Table

Relevant External Links for ENSG00000261481 Gene

GeneLoc Exon Structure for
ENSG00000261481

No data available for mRNA/cDNA for ENSG00000261481 Gene

Expression for ENSG00000261481 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261481 Gene

mRNA expression in normal human tissues for ENSG00000261481 Gene
mRNA expression by GTEx for ENSG00000261481 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261481 Gene

This gene is overexpressed in Liver (x35.1).
genes like me logo Genes that share expression patterns with ENSG00000261481: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261481 Gene

Orthologs for ENSG00000261481 Gene

Evolution for ENSG00000261481 Gene

ENSEMBL:
Gene Tree for ENSG00000261481 (if available)
TreeFam:
Gene Tree for ENSG00000261481 (if available)

No data available for Orthologs for ENSG00000261481 Gene

Paralogs for ENSG00000261481 Gene

No data available for Paralogs for ENSG00000261481 Gene

Variants for ENSG00000261481 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261481 Gene

Disorders for ENSG00000261481 Gene

No disorders were found for ENSG00000261481 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261481 Gene

Publications for ENSG00000261481 Gene

No publications were found for ENSG00000261481 Gene.

No data available for Mastermind for ENSG00000261481 Gene

Products for ENSG00000261481 Gene

Sources for ENSG00000261481 Gene