Aliases for ENSG00000261478 Gene

Subcategory (RNA class) for ENSG00000261478 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000261478 Gene

  • Novel Transcript 5
  • NONHSAG017837.2 91
  • Lnc-TICRR-2 165
  • AC013391.3 5

External Ids for ENSG00000261478 Gene

Previous GeneCards Identifiers for ENSG00000261478 Gene

  • GC15P090052

Summaries for ENSG00000261478 Gene

GeneCards Summary for ENSG00000261478 Gene

ENSG00000261478 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261478 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261478 Gene

Genomics for ENSG00000261478 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261478 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J089509 Enhancer 0.3 dbSUPER 615.7 +1.1 1056 0.7 ZNF189 ENSG00000261478 ENSG00000259713 LINC00928 RHCG TICRR
GH15J089499 Enhancer 1 ENCODE dbSUPER 15.6 -10.2 -10182 0.3 ZNF629 ZNF692 TARDBP ZHX2 REST ZNF341 ATF7 SP1 ZNF10 CTBP1 ENSG00000261478 ENSG00000271396 RHCG TICRR
GH15J089514 Enhancer 0.9 Ensembl ENCODE dbSUPER 14.3 +6.1 6114 1.5 PRDM1 CEBPB SP1 SIN3A RFX5 SREBF1 DACH1 MAFK ENSG00000261478 ENSG00000259713 LINC00928 RHCG TICRR
GH15J089503 Enhancer 0.7 ENCODE dbSUPER 16 -5.7 -5676 0.2 CTBP1 NR3C1 ESRRA PKNOX1 ZNF217 DPF2 RCOR1 SMARCE1 ENSG00000261478 RHCG TICRR
GH15J088613 Enhancer 0.7 ENCODE 10.7 -895.6 -895621 1.3 TEAD4 KDM1A ZNF143 ZNF341 ZNF140 YY1 POLR2A ZNF623 NFXL1 BCOR MIR3529 MIR7-2 ENSG00000261478 AEN piR-57133-203 ISG20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261478 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261478 Gene

Genomic Locations for ENSG00000261478 Gene
chr15:89,508,961-89,510,416
(GRCh38/hg38)
Size:
1,456 bases
Orientation:
Plus strand
chr15:90,052,192-90,053,647
(GRCh37/hg19)
Size:
1,456 bases
Orientation:
Plus strand

Genomic View for ENSG00000261478 Gene

Genes around ENSG00000261478 on UCSC Golden Path with GeneCards custom track
ENSG00000261478 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261478 Gene

Proteins for ENSG00000261478 Gene

Post-translational modifications for ENSG00000261478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261478 Gene

Domains & Families for ENSG00000261478 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261478 Gene

Function for ENSG00000261478 Gene

Phenotypes From GWAS Catalog for ENSG00000261478 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261478 Gene

Localization for ENSG00000261478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261478 Gene

Pathways & Interactions for ENSG00000261478 Gene

PathCards logo

SuperPathways for ENSG00000261478 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261478 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261478 Gene

Drugs & Compounds for ENSG00000261478 Gene

No Compound Related Data Available

Transcripts for ENSG00000261478 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261478 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000020206_9606 lncRNA 1456 3

Ensembl: ENST00000567484 (view in UCSC) ,

LNCipedia: lnc-TICRR-2:1,

NONCODE: NONHSAT048324.2,

URS00008B6B3B_9606 lncRNA 514 1

LNCipedia: lnc-TICRR-2:2,

ENSG00000261478 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261478 Gene

No ASD Table

Relevant External Links for ENSG00000261478 Gene

GeneLoc Exon Structure for
ENSG00000261478

No data available for mRNA/cDNA for ENSG00000261478 Gene

Expression for ENSG00000261478 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261478 Gene

genes like me logo Genes that share expression patterns with ENSG00000261478: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261478 Gene

Orthologs for ENSG00000261478 Gene

Evolution for ENSG00000261478 Gene

ENSEMBL:
Gene Tree for ENSG00000261478 (if available)
TreeFam:
Gene Tree for ENSG00000261478 (if available)

No data available for Orthologs for ENSG00000261478 Gene

Paralogs for ENSG00000261478 Gene

No data available for Paralogs for ENSG00000261478 Gene

Variants for ENSG00000261478 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261478 Gene

Disorders for ENSG00000261478 Gene

Additional Disease Information for ENSG00000261478

No disorders were found for ENSG00000261478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261478 Gene

Publications for ENSG00000261478 Gene

No publications were found for ENSG00000261478 Gene.

No data available for Mastermind for ENSG00000261478 Gene

Products for ENSG00000261478 Gene

Sources for ENSG00000261478 Gene