Aliases for ENSG00000261471 Gene

Subcategory (RNA class) for ENSG00000261471 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000261471 Gene

  • Novel Transcript, Antisense To COTL1 5
  • NONHSAG020168 92
  • Lnc-KLHL36-1 168
  • AC092145.1 5

External Ids for ENSG00000261471 Gene

Summaries for ENSG00000261471 Gene

GeneCards Summary for ENSG00000261471 Gene

ENSG00000261471 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261471 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261471 Gene

Genomics for ENSG00000261471 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261471 Gene

Promoters and enhancers for ENSG00000261471 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J084592 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.1 +7.6 7579 18.6 ZBTB40 SIN3A TCF12 NRF1 USF1 SP1 NCOR1 JUND TEAD4 FOS COTL1 USP10 KIAA0513 ENSG00000261471 OSGIN1 ZDHHC7 MEAK7 CRISPLD2 KLHL36 HSDL1
GH16J084277 Enhancer 0.7 Ensembl 5.4 -316.9 -316944 0.5 ZNF217 CTCF ZSCAN5C REST RAD21 TRIM22 HINFP SMC3 ZNF205 ZNF654 ENSG00000261471 RNA5SP433 RF00001-139 WFDC1
GH16J084613 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +22.4 22353 6.3 HNRNPK EP300 SIN3A NRF1 MYC TCF12 USF1 SP1 GTF2E2 PHF8 COTL1 lnc-TLDC1-3 MEAK7 ENSG00000261243 TAF1C ENSG00000260859 ENSG00000261471 HSALNG0113149
GH16J084588 Enhancer 0.6 Ensembl dbSUPER 0.7 -3.7 -3692 0.2 KDM1A MEF2B ZMYM3 ESRRA piR-43104-022 COTL1 ENSG00000261471 lnc-TLDC1-3
GH16J084591 Enhancer 0.4 FANTOM5 dbSUPER 0.7 -3.3 -3254 0 COTL1 HSDL1 ENSG00000261471 piR-43104-022 lnc-TLDC1-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261471 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261471 Gene

Genomic Locations for ENSG00000261471 Gene
chr16:84,594,393-84,596,826
(GRCh38/hg38)
Size:
2,434 bases
Orientation:
Plus strand
chr16:84,627,999-84,630,432
(GRCh37/hg19)
Size:
2,434 bases
Orientation:
Plus strand

Genomic View for ENSG00000261471 Gene

Genes around ENSG00000261471 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261471 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261471 Gene

Proteins for ENSG00000261471 Gene

Post-translational modifications for ENSG00000261471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261471 Gene

Domains & Families for ENSG00000261471 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261471 Gene

Function for ENSG00000261471 Gene

Phenotypes From GWAS Catalog for ENSG00000261471 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261471 Gene

Localization for ENSG00000261471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261471 Gene

Pathways & Interactions for ENSG00000261471 Gene

PathCards logo

SuperPathways for ENSG00000261471 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000261471 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261471 Gene

Drugs & Compounds for ENSG00000261471 Gene

No Compound Related Data Available

Transcripts for ENSG00000261471 Gene

mRNA/cDNA for ENSG00000261471 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261471 Gene

No ASD Table

Relevant External Links for ENSG00000261471 Gene

GeneLoc Exon Structure for
ENSG00000261471

Expression for ENSG00000261471 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261471 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261471 Gene

This gene is overexpressed in Whole Blood (x33.5) and Spleen (x4.8).
genes like me logo Genes that share expression patterns with ENSG00000261471: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261471 Gene

Orthologs for ENSG00000261471 Gene

Evolution for ENSG00000261471 Gene

ENSEMBL:
Gene Tree for ENSG00000261471 (if available)
TreeFam:
Gene Tree for ENSG00000261471 (if available)

No data available for Orthologs for ENSG00000261471 Gene

Paralogs for ENSG00000261471 Gene

No data available for Paralogs for ENSG00000261471 Gene

Variants for ENSG00000261471 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261471 Gene

Disorders for ENSG00000261471 Gene

No disorders were found for ENSG00000261471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261471 Gene

Publications for ENSG00000261471 Gene

No publications were found for ENSG00000261471 Gene.

No data available for Mastermind for ENSG00000261471 Gene

Products for ENSG00000261471 Gene

Sources for ENSG00000261471 Gene