Aliases for ENSG00000261449 Gene

Subcategory (RNA class) for ENSG00000261449 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000261449 Gene

  • Novel Transcript, Antisense To AP3M2 5
  • NONHSAG050088.2 91
  • NONHSAG050087.2 91
  • AC103724.3 5
  • Lnc-PLAT-1 165

External Ids for ENSG00000261449 Gene

Previous GeneCards Identifiers for ENSG00000261449 Gene

  • GC08M042009
  • GC08M042152

Summaries for ENSG00000261449 Gene

GeneCards Summary for ENSG00000261449 Gene

ENSG00000261449 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261449 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261449 Gene

Genomics for ENSG00000261449 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J042151 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.8 -1807 5.9 SP1 HNRNPL CREB1 GATAD2A CTCF ZNF629 TFE3 RFX1 RFX5 ZNF692 AP3M2 ENSG00000261449 IKBKB ENSG00000253408 POLB KAT6A DKK4 ENSG00000254165 ENSG00000238966 piR-38189
GH08J042147 Enhancer 0.6 ENCODE dbSUPER 0.7 +4.5 4504 1.2 GABPA CEBPA SPI1 CEBPB POLB KAT6A ENSG00000238966 AP3M2 ENSG00000261449 LOC107986939 RF00017-7003
GH08J042145 Enhancer 0.7 dbSUPER 0.4 +6.7 6657 1.9 ZNF629 ZNF692 JUND PRDM1 NFE2 ZNF316 OSR2 ZBTB17 MAFG POLR2A AP3M2 ENSG00000238966 KAT6A LOC107986939 ENSG00000261449 RF00017-7003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261449 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261449 Gene

Genomic Locations for ENSG00000261449 Gene
chr8:42,151,772-42,152,763
(GRCh38/hg38)
Size:
992 bases
Orientation:
Minus strand
chr8:42,009,290-42,010,281
(GRCh37/hg19)
Size:
992 bases
Orientation:
Minus strand

Genomic View for ENSG00000261449 Gene

Genes around ENSG00000261449 on UCSC Golden Path with GeneCards custom track
ENSG00000261449 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261449 Gene

Proteins for ENSG00000261449 Gene

Post-translational modifications for ENSG00000261449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261449 Gene

Domains & Families for ENSG00000261449 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261449 Gene

Function for ENSG00000261449 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261449 Gene

Localization for ENSG00000261449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261449 Gene

Pathways & Interactions for ENSG00000261449 Gene

PathCards logo

SuperPathways for ENSG00000261449 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261449 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261449 Gene

Drugs & Compounds for ENSG00000261449 Gene

No Compound Related Data Available

Transcripts for ENSG00000261449 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261449 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000023D2B6_9606 lncRNA 992 3

Ensembl: ENST00000564481 (view in UCSC) ,

LNCipedia: lnc-PLAT-1:1,

NONCODE: NONHSAT126264.2,

URS00008BE432_9606 lncRNA 365 2

LNCipedia: lnc-PLAT-1:7,

NONCODE: NONHSAT126263.2,

URS0000D5A327_9606 lncRNA 3728 1

LNCipedia: lnc-PLAT-1:3,

URS0000D58135_9606 lncRNA 839 1

LNCipedia: lnc-PLAT-1:2,

URS0000D5DC4E_9606 lncRNA 207 1

LNCipedia: lnc-PLAT-1:6,

ENSG00000261449 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261449 Gene

No ASD Table

Relevant External Links for ENSG00000261449 Gene

GeneLoc Exon Structure for
ENSG00000261449

No data available for mRNA/cDNA for ENSG00000261449 Gene

Expression for ENSG00000261449 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261449 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261449 Gene

This gene is overexpressed in Testis (x47.1).
genes like me logo Genes that share expression patterns with ENSG00000261449: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261449 Gene

Orthologs for ENSG00000261449 Gene

Evolution for ENSG00000261449 Gene

ENSEMBL:
Gene Tree for ENSG00000261449 (if available)
TreeFam:
Gene Tree for ENSG00000261449 (if available)

No data available for Orthologs for ENSG00000261449 Gene

Paralogs for ENSG00000261449 Gene

No data available for Paralogs for ENSG00000261449 Gene

Variants for ENSG00000261449 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261449 Gene

Disorders for ENSG00000261449 Gene

Additional Disease Information for ENSG00000261449

No disorders were found for ENSG00000261449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261449 Gene

Publications for ENSG00000261449 Gene

No publications were found for ENSG00000261449 Gene.

No data available for Mastermind for ENSG00000261449 Gene

Products for ENSG00000261449 Gene

Sources for ENSG00000261449 Gene