Aliases for ENSG00000261420 Gene

Subcategory (RNA class) for ENSG00000261420 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261420 Gene

  • Novel Transcript, Antisense To BRP44L 5
  • NONHSAG045394.2 91
  • HSALNG0055096 164
  • Lnc-FGFR1OP-2 165
  • AL022069.1 5

External Ids for ENSG00000261420 Gene

Previous GeneCards Identifiers for ENSG00000261420 Gene

  • GC06P166797

Summaries for ENSG00000261420 Gene

GeneCards Summary for ENSG00000261420 Gene

ENSG00000261420 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261420 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261420 Gene

Genomics for ENSG00000261420 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261420 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J166381 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.5 -477 3.8 SP1 HNRNPL GATAD2A CTCF PRDM10 ZNF629 RFX1 NFKBIZ ZNF692 POLR2A ENSG00000261420 MPC1 lnc-MPC1-2 SFT2D1 PRR18 piR-40666-016
GH06J167337 Enhancer 0.7 Ensembl 11.3 +955.1 955123 0.2 ARHGAP35 ZNF24 ZNF239 TCF12 SCRT2 MNT ZNF248 TARDBP RAD51 FOXA2 ENSG00000261420 LOC100421518 TTLL2 ENSG00000203690
GH06J166387 Enhancer 1.1 Ensembl ENCODE 0.4 +5.3 5323 2.2 GATAD2A REST TFE3 SOX13 NFKBIZ RCOR2 ZNF7 RXRB NR2C1 IRF2 ENSG00000280057 PRR18 SFT2D1 ENSG00000261420 MPC1 piR-30642 RPS6KA2
GH06J166394 Enhancer 0.8 ENCODE 0.4 +11.5 11530 0.2 GATAD2A TFE3 RCOR2 RXRB IRF2 SP1 PBX2 CEBPA MNT SOX13 piR-30642 PRR18 SFT2D1 MPC1 ENSG00000261420 piR-54863 RPS6KA2
GH06J166390 Enhancer 0.2 Ensembl 0.4 +7.6 7623 0.8 PRR18 SFT2D1 ENSG00000280057 piR-30642 ENSG00000261420 MPC1 RPS6KA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261420 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261420 Gene

Genomic Locations for ENSG00000261420 Gene
chr6:166,383,178-166,396,413
(GRCh38/hg38)
Size:
13,236 bases
Orientation:
Plus strand
chr6:166,796,677-166,798,312
(GRCh37/hg19)
Size:
1,636 bases
Orientation:
Plus strand

Genomic View for ENSG00000261420 Gene

Genes around ENSG00000261420 on UCSC Golden Path with GeneCards custom track
ENSG00000261420 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261420 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261420 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261420 Gene

Proteins for ENSG00000261420 Gene

Post-translational modifications for ENSG00000261420 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261420 Gene

Domains & Families for ENSG00000261420 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261420 Gene

Function for ENSG00000261420 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261420 Gene

Localization for ENSG00000261420 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261420 Gene

Pathways & Interactions for ENSG00000261420 Gene

PathCards logo

SuperPathways for ENSG00000261420 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261420 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261420 Gene

Drugs & Compounds for ENSG00000261420 Gene

No Compound Related Data Available

Transcripts for ENSG00000261420 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261420 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000043E6C3_9606 lncRNA 1636 2

Ensembl: ENST00000568025 (view in UCSC) ,

LNCipedia: lnc-FGFR1OP-2:1,

URS00008BDD32_9606 lncRNA 1785 3

LncBook: HSALNT0116642,

LNCipedia: lnc-FGFR1OP-2:3,

NONCODE: NONHSAT116047.2,

URS00008BCA80_9606 lncRNA 5490 2

LNCipedia: lnc-FGFR1OP-2:2,

NONCODE: NONHSAT116046.2,

URS0000D57E06_9606 lncRNA 13206 1

LNCipedia: lnc-FGFR1OP-2:8,

URS0000D5A20D_9606 lncRNA 6881 1

LNCipedia: lnc-FGFR1OP-2:7,

ENSG00000261420 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261420 Gene

No ASD Table

Relevant External Links for ENSG00000261420 Gene

GeneLoc Exon Structure for
ENSG00000261420

No data available for mRNA/cDNA for ENSG00000261420 Gene

Expression for ENSG00000261420 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261420 Gene

genes like me logo Genes that share expression patterns with ENSG00000261420: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261420 Gene

Orthologs for ENSG00000261420 Gene

Evolution for ENSG00000261420 Gene

ENSEMBL:
Gene Tree for ENSG00000261420 (if available)
TreeFam:
Gene Tree for ENSG00000261420 (if available)

No data available for Orthologs for ENSG00000261420 Gene

Paralogs for ENSG00000261420 Gene

No data available for Paralogs for ENSG00000261420 Gene

Variants for ENSG00000261420 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261420 Gene

Disorders for ENSG00000261420 Gene

No disorders were found for ENSG00000261420 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261420 Gene

Publications for ENSG00000261420 Gene

No publications were found for ENSG00000261420 Gene.

No data available for Mastermind for ENSG00000261420 Gene

Products for ENSG00000261420 Gene

Sources for ENSG00000261420 Gene