Aliases for ENSG00000261403 Gene

Subcategory (RNA class) for ENSG00000261403 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261403 Gene

  • Novel Transcript 5
  • NONHSAG017540.2 91
  • Lnc-TBC1D2B-1 165
  • HSALNG0107426 164
  • AC104758.4 5

External Ids for ENSG00000261403 Gene

Previous GeneCards Identifiers for ENSG00000261403 Gene

  • GC15M078246

Summaries for ENSG00000261403 Gene

GeneCards Summary for ENSG00000261403 Gene

ENSG00000261403 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261403 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261403 Gene

Genomics for ENSG00000261403 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261403 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J077973 Enhancer 0.6 Ensembl ENCODE 600.7 +1.2 1228 5.2 NR2F2 KLF17 RXRA SP1 ENSG00000261403 LOC645752 ADAMTS7P3 COMMD4P1 CIB2 ENSG00000259792 piR-35674-172 TBC1D2B LINGO1
GH15J077976 Enhancer 0.5 Ensembl 600.7 -1.9 -1872 0.6 ZIC2 ZNF316 MAFG ZFHX2 MAFK EGR2 EMSY ADAMTS7P3 ENSG00000261403 ENSG00000259792 LOC645752 lnc-SH2D7-11 TBC1D2B LINGO1
GH15J077957 Enhancer 0.8 ENCODE 0.4 +16.5 16541 2.4 GATAD2A CTCF PRDM10 ZNF692 ZNF143 MTA1 PATZ1 REST RAD21 TRIM22 piR-35674-172 LOC645752 SH2D7 TBC1D2B ENSG00000199633 ENSG00000261403 LINGO1
GH15J077966 Enhancer 0.6 ENCODE 0.4 +8.2 8235 0.2 CTCF ZNF143 REST RAD21 TRIM22 ARID3A RUNX3 SMC3 ZNF217 JUND ENSG00000261403 piR-35674-172 TBC1D2B LINGO1
GH15J077953 Enhancer 0.6 Ensembl 0.4 +21.2 21229 1.2 ATF7 HDAC1 CEBPA ARID3A CEBPB CTBP1 NFE2 OSR2 NR2F1 CEBPG LOC645752 piR-35674-172 COMMD4P1 lnc-TBC1D2B-3 ENSG00000261403 TBC1D2B LINGO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261403 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261403 Gene

Genomic Locations for ENSG00000261403 Gene
chr15:77,954,075-77,975,229
(GRCh38/hg38)
Size:
21,155 bases
Orientation:
Minus strand
chr15:78,246,417-78,255,996
(GRCh37/hg19)
Size:
9,580 bases
Orientation:
Minus strand

Genomic View for ENSG00000261403 Gene

Genes around ENSG00000261403 on UCSC Golden Path with GeneCards custom track
ENSG00000261403 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261403 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261403 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261403 Gene

Proteins for ENSG00000261403 Gene

Post-translational modifications for ENSG00000261403 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261403 Gene

Domains & Families for ENSG00000261403 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261403 Gene

Function for ENSG00000261403 Gene

Phenotypes From GWAS Catalog for ENSG00000261403 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261403 Gene

Localization for ENSG00000261403 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261403 Gene

Pathways & Interactions for ENSG00000261403 Gene

PathCards logo

SuperPathways for ENSG00000261403 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261403 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261403 Gene

Drugs & Compounds for ENSG00000261403 Gene

No Compound Related Data Available

Transcripts for ENSG00000261403 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261403 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004C10AC_9606 lncRNA 571 3

Ensembl: ENST00000569892 (view in UCSC) ,

LNCipedia: lnc-TBC1D2B-1:1,

NONCODE: NONHSAT047505.2,

URS00009B9E6D_9606 lncRNA 349 2

LncBook: HSALNT0223100,

NONCODE: NONHSAT171806.1,

ENSG00000261403 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261403 Gene

No ASD Table

Relevant External Links for ENSG00000261403 Gene

GeneLoc Exon Structure for
ENSG00000261403

No data available for mRNA/cDNA for ENSG00000261403 Gene

Expression for ENSG00000261403 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261403 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261403 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with ENSG00000261403: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261403 Gene

Orthologs for ENSG00000261403 Gene

Evolution for ENSG00000261403 Gene

ENSEMBL:
Gene Tree for ENSG00000261403 (if available)
TreeFam:
Gene Tree for ENSG00000261403 (if available)

No data available for Orthologs for ENSG00000261403 Gene

Paralogs for ENSG00000261403 Gene

No data available for Paralogs for ENSG00000261403 Gene

Variants for ENSG00000261403 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261403 Gene

Disorders for ENSG00000261403 Gene

Additional Disease Information for ENSG00000261403

No disorders were found for ENSG00000261403 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261403 Gene

Publications for ENSG00000261403 Gene

No publications were found for ENSG00000261403 Gene.

No data available for Mastermind for ENSG00000261403 Gene

Products for ENSG00000261403 Gene

Sources for ENSG00000261403 Gene