Aliases for ENSG00000261399 Gene

Subcategory (RNA class) for ENSG00000261399 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261399 Gene

  • Novel Transcript, Antisense To MAPK8IP3 5
  • NONHSAG018271.2 91
  • HSALNG0108928 164
  • AL031710.1 5
  • Lnc-NME3-2 165

External Ids for ENSG00000261399 Gene

Previous GeneCards Identifiers for ENSG00000261399 Gene

  • GC16M001763

Summaries for ENSG00000261399 Gene

GeneCards Summary for ENSG00000261399 Gene

ENSG00000261399 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000261399 include Thyroid Cancer, Nonmedullary, 1.

Additional gene information for ENSG00000261399 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261399 Gene

Genomics for ENSG00000261399 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261399 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J001712 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 +0.7 707 2.8 POLR2A ZIC2 YY1 ZBTB44 PAX8 ASH2L NBN EBF1 MAZ ATF7 ENSG00000261399 LOC101929480 TMEM204 ENSG00000275092 MAPK8IP3 NME3
GH16J001711 Enhancer 0.8 ENCODE dbSUPER 0.7 +2.6 2630 0.6 GATAD2A RXRB CEBPA FOXP1 SAP130 POLR2A SMAD4 RARA SMARCA4 RAD21 TMEM204 ENSG00000261399 ENSG00000275092 MAPK8IP3 NME3
GH16J001710 Enhancer 0.3 Ensembl 0.7 +3.9 3866 1 ZSCAN16 TMEM204 ENSG00000261399 ENSG00000275092 MAPK8IP3 NME3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261399 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261399 Gene

Genomic Locations for ENSG00000261399 Gene
chr16:1,713,527-1,714,367
(GRCh38/hg38)
Size:
841 bases
Orientation:
Minus strand

Genomic View for ENSG00000261399 Gene

Genes around ENSG00000261399 on UCSC Golden Path with GeneCards custom track
ENSG00000261399 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261399 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261399 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261399 Gene

Proteins for ENSG00000261399 Gene

Post-translational modifications for ENSG00000261399 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261399 Gene

Domains & Families for ENSG00000261399 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261399 Gene

Function for ENSG00000261399 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261399 Gene

Localization for ENSG00000261399 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261399 Gene

Pathways & Interactions for ENSG00000261399 Gene

PathCards logo

SuperPathways for ENSG00000261399 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261399 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261399 Gene

Drugs & Compounds for ENSG00000261399 Gene

No Compound Related Data Available

Transcripts for ENSG00000261399 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261399 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000024E1A4_9606 lncRNA 468 2

Ensembl: ENST00000570022 (view in UCSC) ,

LNCipedia: lnc-NME3-2:1,

URS00008B833B_9606 lncRNA 585 3

LncBook: HSALNT0226468,

LNCipedia: lnc-NME3-2:2,

NONCODE: NONHSAT051997.2,

URS00009BB6FE_9606 lncRNA 307 2

LncBook: HSALNT0226469,

NONCODE: NONHSAT173511.1,

URS0000D5BA93_9606 lncRNA 447 1

LNCipedia: lnc-NME3-2:3,

ENSG00000261399 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261399 Gene

No ASD Table

Relevant External Links for ENSG00000261399 Gene

GeneLoc Exon Structure for
ENSG00000261399

No data available for mRNA/cDNA for ENSG00000261399 Gene

Expression for ENSG00000261399 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261399 Gene

Orthologs for ENSG00000261399 Gene

Evolution for ENSG00000261399 Gene

ENSEMBL:
Gene Tree for ENSG00000261399 (if available)
TreeFam:
Gene Tree for ENSG00000261399 (if available)

No data available for Orthologs for ENSG00000261399 Gene

Paralogs for ENSG00000261399 Gene

No data available for Paralogs for ENSG00000261399 Gene

Variants for ENSG00000261399 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261399 Gene

Disorders for ENSG00000261399 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000261399 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
thyroid cancer, nonmedullary, 1
  • nmtc1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000261399

genes like me logo Genes that share disorders with ENSG00000261399: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000261399 Gene

Publications for ENSG00000261399 Gene

No publications were found for ENSG00000261399 Gene.

No data available for Mastermind for ENSG00000261399 Gene

Products for ENSG00000261399 Gene

Sources for ENSG00000261399 Gene