Aliases for ENSG00000261396 Gene

Subcategory (RNA class) for ENSG00000261396 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261396 Gene

  • Novel Transcript, Antisense To FAM65A 5
  • NONHSAG019748.2 91
  • NONHSAG019749.2 91
  • HSALNG0112214 164
  • AC027682.5 5
  • Lnc-AGRP-1 165

External Ids for ENSG00000261396 Gene

Previous GeneCards Identifiers for ENSG00000261396 Gene

  • GC16M067572

Summaries for ENSG00000261396 Gene

GeneCards Summary for ENSG00000261396 Gene

ENSG00000261396 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261396 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261396 Gene

Genomics for ENSG00000261396 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261396 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J067542 Enhancer 0.7 Ensembl dbSUPER 600.7 -1.0 -995 0.2 NR2C1 BCL11A NR2F2 NR2F1 NR2F6 BCL11B ESRRA RXRA ENSG00000259945 ENSG00000260894 ENSG00000261396 RIPOR1 CTCF
GH16J067527 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.8 9780 5 HNRNPL GATAD2A ATF7 RFX1 KDM1A BACH1 ZNF300 FOXA1 LARP7 ZIC2 ENSG00000276075 LOC100505942 ATP6V0D1 C16orf70 ZDHHC1 ENKD1 SLC7A6OS NAE1 PSMB10 RIPOR1
GH16J067536 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +2.1 2127 2.9 CTCF ZBTB33 BACH1 LARP7 RBFOX2 TRIM22 EZH2 GABPA PKNOX1 SOX13 ATP6V0D1 SMPD3 ENSG00000261396 LOC100505942 RIPOR1 CTCF
GH16J067541 Enhancer 0.8 ENCODE dbSUPER 0.7 -2.2 -2249 1.8 PRDM10 SP2 RUNX3 FOXA2 RBM22 HDGF ZFHX2 SIN3A KLF17 ZNF513 ENSG00000259945 ENSG00000260894 ENSG00000261396 RIPOR1 CTCF
GH16J067532 Promoter/Enhancer 0.7 Ensembl dbSUPER 0.4 +7.0 7005 0.2 PRDM1 GATA2 LOC100505942 ENSG00000261396 RIPOR1 CTCF
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261396 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261396 Gene

Genomic Locations for ENSG00000261396 Gene
chr16:67,538,557-67,540,106
(GRCh38/hg38)
Size:
1,550 bases
Orientation:
Minus strand
chr16:67,572,460-67,574,009
(GRCh37/hg19)
Size:
1,550 bases
Orientation:
Minus strand

Genomic View for ENSG00000261396 Gene

Genes around ENSG00000261396 on UCSC Golden Path with GeneCards custom track
ENSG00000261396 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261396 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261396 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261396 Gene

Proteins for ENSG00000261396 Gene

Post-translational modifications for ENSG00000261396 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261396 Gene

Domains & Families for ENSG00000261396 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261396 Gene

Function for ENSG00000261396 Gene

Phenotypes From GWAS Catalog for ENSG00000261396 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261396 Gene

Localization for ENSG00000261396 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261396 Gene

Pathways & Interactions for ENSG00000261396 Gene

PathCards logo

SuperPathways for ENSG00000261396 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261396 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261396 Gene

Drugs & Compounds for ENSG00000261396 Gene

No Compound Related Data Available

Transcripts for ENSG00000261396 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261396 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000277871_9606 lncRNA 530 3

Ensembl: ENST00000567122 (view in UCSC) ,

LNCipedia: lnc-AGRP-1:22,

NONCODE: NONHSAT143137.2,

URS00009B88AC_9606 lncRNA 910 2

LncBook: HSALNT0232679,

NONCODE: NONHSAT173986.1,

URS0000D5D77C_9606 lncRNA 838 2

LncBook: HSALNT0232688,

LNCipedia: lnc-AGRP-1:9,

URS0000D58A3B_9606 lncRNA 24207 1

LNCipedia: lnc-AGRP-1:10,

URS0000D5D136_9606 lncRNA 22074 1

LNCipedia: lnc-AGRP-1:13,

ENSG00000261396 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261396 Gene

No ASD Table

Relevant External Links for ENSG00000261396 Gene

GeneLoc Exon Structure for
ENSG00000261396

No data available for mRNA/cDNA for ENSG00000261396 Gene

Expression for ENSG00000261396 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261396 Gene

genes like me logo Genes that share expression patterns with ENSG00000261396: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261396 Gene

Orthologs for ENSG00000261396 Gene

Evolution for ENSG00000261396 Gene

ENSEMBL:
Gene Tree for ENSG00000261396 (if available)
TreeFam:
Gene Tree for ENSG00000261396 (if available)

No data available for Orthologs for ENSG00000261396 Gene

Paralogs for ENSG00000261396 Gene

No data available for Paralogs for ENSG00000261396 Gene

Variants for ENSG00000261396 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261396 Gene

Disorders for ENSG00000261396 Gene

No disorders were found for ENSG00000261396 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261396 Gene

Publications for ENSG00000261396 Gene

No publications were found for ENSG00000261396 Gene.

No data available for Mastermind for ENSG00000261396 Gene

Products for ENSG00000261396 Gene

Sources for ENSG00000261396 Gene