ENSG00000261367 Gene (RNA Gene)

 

GC16P030147
GIFtS:
8
See more...

Aliases for ENSG00000261367 Gene

Subcategory (RNA class) for ENSG00000261367 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261367 Gene

  • Novel Transcript, Antisense To GDPD3 5
  • NONHSAG019076.2 91
  • HSALNG0110690 164
  • Lnc-PPP4C-11 165
  • AC012645.2 5

External Ids for ENSG00000261367 Gene

Previous GeneCards Identifiers for ENSG00000261367 Gene

  • GC16P030118
  • GC16P030111

Summaries for ENSG00000261367 Gene

GeneCards Summary for ENSG00000261367 Gene

ENSG00000261367 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261367 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261367 Gene

Genomics for ENSG00000261367 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000261367 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J030406 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 6.1 +300.5 300540 4 SP1 HNRNPL CREB1 GATAD2A CTCF YBX1 PRDM10 ZNF629 TFE3 SOX13 ZNF771 ZNF785 FUS SMG1P5 SETD1A ZNF689 SRCAP ZNF688 SMG1P2 MIR762HG
GH16J030051 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 4.4 -54.3 -54259 4.6 RNF2 SP1 CREB1 GATAD2A CTCF PRDM10 ZNF629 TFE3 RFX1 LEF1 LOC112694756 TLCD3B SETD1A SRCAP NPIPB12 INO80E ZNF747 ZNF764 NPIPB13 SMG1P5
GH16J030469 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE 4.5 +364.7 364749 6.5 SP1 HNRNPL RCOR2 POLR2A BACH1 LARP7 JUND PRDM1 ZNF143 RELA ITGAL ENSG00000222701 SMG1P5 ENSG00000261367 SEPTIN1 CORO1A SEPHS2
GH16J030349 Enhancer 1 Ensembl ENCODE 6 +242.5 242544 2.4 SP1 ZNF7 BACH1 ZNF143 RELA TCF12 IKZF2 RCOR1 TRIM22 ZNF600 ZNF785 MIR762HG FUS TAOK2 SMG1P5 ZNF747 YPEL3 TBX6 ENSG00000261367 piR-57761
GH16J029915 Enhancer 0.6 Ensembl ENCODE 7.7 -191.8 -191813 1.5 PRDM1 ZNF768 KDM1A NR2F6 ENSG00000279789 INO80E TMEM219 HIRIP3 YPEL3 DOC2A TAOK2 C16orf92 TLCD3B MVP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261367 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261367 Gene

Genomic Locations for ENSG00000261367 Gene
chr16:30,107,675-30,110,639
(GRCh38/hg38)
Size:
2,965 bases
Orientation:
Plus strand
chr16:30,118,996-30,121,862
(GRCh37/hg19)
Size:
2,867 bases
Orientation:
Plus strand

Genomic View for ENSG00000261367 Gene

Genes around ENSG00000261367 on UCSC Golden Path with GeneCards custom track
ENSG00000261367 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261367 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261367 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000261367 Gene

Proteins for ENSG00000261367 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000261367 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261367 Gene

Domains & Families for ENSG00000261367 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261367 Gene

Function for ENSG00000261367 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000261367 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261367 Gene

Localization for ENSG00000261367 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261367 Gene

Pathways & Interactions for ENSG00000261367 Gene

PathCards logo

SuperPathways for ENSG00000261367 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261367 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261367 Gene

Drugs & Compounds for ENSG00000261367 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000261367 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261367 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000056C088_9606 lncRNA 553 4

Ensembl: ENST00000566190 (view in UCSC) ,

LncBook: HSALNT0229659,

LNCipedia: lnc-PPP4C-11:1,

NONCODE: NONHSAT141705.2,

URS00009C0AC9_9606 lncRNA 262 2

LncBook: HSALNT0229660,

NONCODE: NONHSAT172852.1,

ENSG00000261367 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261367 Gene

No ASD Table

Relevant External Links for ENSG00000261367 Gene

GeneLoc Exon Structure for
ENSG00000261367

No data available for mRNA/cDNA for ENSG00000261367 Gene

Expression for ENSG00000261367 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261367 Gene

mRNA expression in normal human tissues for ENSG00000261367 Gene
mRNA expression by GTEx for ENSG00000261367 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261367 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000261367: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261367 Gene

Orthologs for ENSG00000261367 Gene

Evolution for ENSG00000261367 Gene

ENSEMBL:
Gene Tree for ENSG00000261367 (if available)
TreeFam:
Gene Tree for ENSG00000261367 (if available)

No data available for Orthologs for ENSG00000261367 Gene

Paralogs for ENSG00000261367 Gene

No data available for Paralogs for ENSG00000261367 Gene

Variants for ENSG00000261367 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261367 Gene

Disorders for ENSG00000261367 Gene

Additional Disease Information for ENSG00000261367

Open Targets Platform

No disorders were found for ENSG00000261367 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261367 Gene

Publications for ENSG00000261367 Gene

No publications were found for ENSG00000261367 Gene.

No data available for Mastermind for ENSG00000261367 Gene

Products for ENSG00000261367 Gene

Sources for ENSG00000261367 Gene