Aliases for ENSG00000261346 Gene

Subcategory (RNA class) for ENSG00000261346 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261346 Gene

  • Novel Transcript, Antisense To ITGAL 5
  • NONHSAG019095.2 91
  • HSALNG0110742 164
  • Lnc-SEPHS2-2 165
  • AC116348.5 5

External Ids for ENSG00000261346 Gene

Previous GeneCards Identifiers for ENSG00000261346 Gene

  • GC16M030490

Summaries for ENSG00000261346 Gene

GeneCards Summary for ENSG00000261346 Gene

ENSG00000261346 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261346 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261346 Gene

Genomics for ENSG00000261346 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261346 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J030491 Enhancer 1.1 Ensembl ENCODE 600.7 +0.2 160 1.2 PRDM10 LEF1 IKZF1 JUND DDX20 PRDM1 PKNOX1 RXRB MTA1 REST ENSG00000261346 MIR762HG SEPHS2 ZNF688 ENSG00000239791 ZNF785 DCTPP1 ZNF689 SNORA80C LOC730183
GH16J030490 Enhancer 0.4 Ensembl ENCODE 600.7 +1.7 1660 0.6 ZNF341 ENSG00000261346 SEPHS2 ZNF688 ENSG00000239791 ZNF785 DCTPP1 ZNF689 SNORA80C TBC1D10B SRCAP
GH16J030488 Enhancer 1 Ensembl ENCODE 0.7 +2.8 2810 1.3 GATAD2A PRDM10 REST TFE3 RCOR2 FOXA1 ZIC2 RXRB IRF2 SP1 SEPHS2 ZNF688 ENSG00000239791 ZNF785 DCTPP1 ZNF689 SNORA80C TBC1D10B SRCAP RNU6-1043P
GH16J030485 Enhancer 0.2 Ensembl 0.4 +6.3 6260 0.2 RF00066-073 RNU7-61P ENSG00000261346 ITGAL ZNF768
GH16J030486 Enhancer 0.2 Ensembl 0.4 +5.9 5861 0.2 SEPHS2 ENSG00000239791 ZNF688 ZNF785 DCTPP1 ZNF689 SNORA80C TBC1D10B RNU6-1043P SRCAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261346 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261346 Gene

Genomic Locations for ENSG00000261346 Gene
chr16:30,477,180-30,492,161
(GRCh38/hg38)
Size:
14,982 bases
Orientation:
Minus strand
chr16:30,488,501-30,500,674
(GRCh37/hg19)
Size:
12,174 bases
Orientation:
Minus strand

Genomic View for ENSG00000261346 Gene

Genes around ENSG00000261346 on UCSC Golden Path with GeneCards custom track
ENSG00000261346 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261346 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261346 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261346 Gene

Proteins for ENSG00000261346 Gene

Post-translational modifications for ENSG00000261346 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261346 Gene

Domains & Families for ENSG00000261346 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261346 Gene

Function for ENSG00000261346 Gene

Phenotypes From GWAS Catalog for ENSG00000261346 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261346 Gene

Localization for ENSG00000261346 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261346 Gene

Pathways & Interactions for ENSG00000261346 Gene

PathCards logo

SuperPathways for ENSG00000261346 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261346 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261346 Gene

Drugs & Compounds for ENSG00000261346 Gene

No Compound Related Data Available

Transcripts for ENSG00000261346 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261346 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000061E89B_9606 lncRNA 699 3

Ensembl: ENST00000569459 (view in UCSC) ,

LNCipedia: lnc-SEPHS2-2:1,

NONCODE: NONHSAT141752.2,

URS00008BF00A_9606 lncRNA 522 3

LncBook: HSALNT0229721,

LNCipedia: lnc-SEPHS2-2:2,

NONCODE: NONHSAT141755.2,

URS00009AFF1D_9606 lncRNA 1410 2

LncBook: HSALNT0229719,

NONCODE: NONHSAT173763.1,

URS00009BF390_9606 lncRNA 356 2

LncBook: HSALNT0229720,

NONCODE: NONHSAT173764.1,

ENSG00000261346 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261346 Gene

No ASD Table

Relevant External Links for ENSG00000261346 Gene

GeneLoc Exon Structure for
ENSG00000261346

No data available for mRNA/cDNA for ENSG00000261346 Gene

Expression for ENSG00000261346 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261346 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261346 Gene

This gene is overexpressed in Whole Blood (x21.8) and Spleen (x5.0).
genes like me logo Genes that share expression patterns with ENSG00000261346: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261346 Gene

Orthologs for ENSG00000261346 Gene

Evolution for ENSG00000261346 Gene

ENSEMBL:
Gene Tree for ENSG00000261346 (if available)
TreeFam:
Gene Tree for ENSG00000261346 (if available)

No data available for Orthologs for ENSG00000261346 Gene

Paralogs for ENSG00000261346 Gene

No data available for Paralogs for ENSG00000261346 Gene

Variants for ENSG00000261346 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261346 Gene

Disorders for ENSG00000261346 Gene

Additional Disease Information for ENSG00000261346

No disorders were found for ENSG00000261346 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261346 Gene

Publications for ENSG00000261346 Gene

No publications were found for ENSG00000261346 Gene.

No data available for Mastermind for ENSG00000261346 Gene

Products for ENSG00000261346 Gene

Sources for ENSG00000261346 Gene