Aliases for ENSG00000261342 Gene

Subcategory (RNA class) for ENSG00000261342 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000261342 Gene

  • Novel Transcript 5
  • Lnc-SLC39A3-1 170
  • NONHSAG024447 94
  • HSALNG0123190 169
  • AC006538.2 5

External Ids for ENSG00000261342 Gene

Summaries for ENSG00000261342 Gene

GeneCards Summary for ENSG00000261342 Gene

ENSG00000261342 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261342 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261342 Gene

Genomics for ENSG00000261342 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000261342 Gene

Promoters and enhancers for ENSG00000261342 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J002731 Enhancer 0.5 Ensembl 750.6 -1.8 -1774 0.2 GLIS2 ZIC2 ZBTB10 MYNN GLIS1 ENSG00000261342 GNG7 ENSG00000267001 piR-57190
GH19J002729 Enhancer 0.4 Ensembl 750.6 +0.2 226 0.2 CBFA2T2 RAD51 CREB1 ENSG00000261342 DOT1L ENSG00000286460 ENSG00000267001
GH19J003093 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 20.4 -367.8 -367754 7 ZNF785 ZBTB40 SP1 POLR2A NR2F1 NR2F6 RUNX1 ETV6 NFYC L3MBTL2 GNA11 ZNF77 CACTIN ENSG00000261342 CELF5 ZNF554 APBA3 ZFR2 SGTA SF3A2
GH19J001901 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.4 +824.3 824286 7.2 GTF3C2 ZNF24 ZBTB40 SP1 SIX5 ZBTB6 RBPJ POLR2A USF2 NR2F1 ADAT3 SCAMP4 lnc-CSNK1G2-5 piR-42491-108 piR-57133-287 DAZAP1 SF3A2 TMEM259 TCF3 LOC100288123
GH19J002160 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.4 +561.6 561587 13.7 GTF3C2 ZNF785 ZNF24 ZBTB40 SP1 CTCF SIX5 ZBTB6 FOXA1 MLX DOT1L SF3A2 DAZAP1 TCF3 LOC100288123 ZNF77 CIRBP ENSG00000267317 LMNB2 GADD45B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261342 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000261342 Gene

Genomic Locations for ENSG00000261342 Gene
chr19:2,727,743-2,729,327
(GRCh38/hg38)
Size:
1,585 bases
Orientation:
Minus strand
chr19:2,727,741-2,729,325
(GRCh37/hg19)
Size:
1,585 bases
Orientation:
Minus strand

Genomic View for ENSG00000261342 Gene

Genes around ENSG00000261342 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000261342 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261342 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261342 Gene

Proteins for ENSG00000261342 Gene

Post-translational modifications for ENSG00000261342 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261342 Gene

Domains & Families for ENSG00000261342 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261342 Gene

Function for ENSG00000261342 Gene

Phenotypes From GWAS Catalog for ENSG00000261342 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261342 Gene

Localization for ENSG00000261342 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261342 Gene

Pathways & Interactions for ENSG00000261342 Gene

PathCards logo

SuperPathways for ENSG00000261342 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261342 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000261342 Gene

Drugs & Compounds for ENSG00000261342 Gene

No Compound Related Data Available

Transcripts for ENSG00000261342 Gene

mRNA/cDNA for ENSG00000261342 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LncBook transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261342 Gene

No ASD Table

Relevant External Links for ENSG00000261342 Gene

GeneLoc Exon Structure for
ENSG00000261342

Expression for ENSG00000261342 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000261342 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261342 Gene

This gene is overexpressed in Brain - Cortex (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000261342: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261342 Gene

Orthologs for ENSG00000261342 Gene

Evolution for ENSG00000261342 Gene

ENSEMBL:
Gene Tree for ENSG00000261342 (if available)
TreeFam:
Gene Tree for ENSG00000261342 (if available)

No data available for Orthologs for ENSG00000261342 Gene

Paralogs for ENSG00000261342 Gene

No data available for Paralogs for ENSG00000261342 Gene

Variants for ENSG00000261342 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261342 Gene

Disorders for ENSG00000261342 Gene

No disorders were found for ENSG00000261342 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261342 Gene

Publications for ENSG00000261342 Gene

No publications were found for ENSG00000261342 Gene.

No data available for External Links for ENSG00000261342 Gene

Products for ENSG00000261342 Gene

Sources for ENSG00000261342 Gene