Aliases for ENSG00000261226 Gene

Subcategory (RNA class) for ENSG00000261226 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261226 Gene

  • Novel Transcript 5
  • NONHSAG020316.2 91
  • HSALNG0113562 164
  • Lnc-PABPN1L-1 165
  • AC092384.3 5

External Ids for ENSG00000261226 Gene

Previous GeneCards Identifiers for ENSG00000261226 Gene

  • GC16M089003

Summaries for ENSG00000261226 Gene

GeneCards Summary for ENSG00000261226 Gene

ENSG00000261226 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261226 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261226 Gene

Genomics for ENSG00000261226 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261226 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J088935 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 617 6.7 CTCF ZBTB33 BACH1 TARDBP ZHX2 FOXA1 LARP7 ZNF143 RAD21 TRIM22 CBFA2T3 LOC100129697 ENSG00000261226 LOC107984871 ENSG00000259881 LOC105371409
GH16J088967 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.8 -33.8 -33837 12.4 SP1 HNRNPL LEF1 IKZF1 POLR2A BACH1 JUND LARP7 DDX20 ZNF143 CBFA2T3 PABPN1L LOC100129697 ENSG00000261226 ACSF3 CDK10 SNAI3-AS1 CDH15 GALNS CYBA
GH16J088905 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.7 +31.3 31250 8 CREB1 RFX1 IKZF1 KDM1A RFX3 KLF9 BMI1 TCF12 YY1 PKNOX1 CBFA2T3 CDK10 RNF166 ENSG00000261226 LOC102724632 piR-35312-015 LOC105371409 PABPN1L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261226 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261226 Gene

Genomic Locations for ENSG00000261226 Gene
chr16:88,936,779-88,939,651
(GRCh38/hg38)
Size:
2,873 bases
Orientation:
Minus strand
chr16:89,003,187-89,006,059
(GRCh37/hg19)
Size:
2,873 bases
Orientation:
Minus strand

Genomic View for ENSG00000261226 Gene

Genes around ENSG00000261226 on UCSC Golden Path with GeneCards custom track
ENSG00000261226 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261226 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261226 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261226 Gene

Proteins for ENSG00000261226 Gene

Post-translational modifications for ENSG00000261226 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261226 Gene

Domains & Families for ENSG00000261226 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261226 Gene

Function for ENSG00000261226 Gene

Phenotypes From GWAS Catalog for ENSG00000261226 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261226 Gene

Localization for ENSG00000261226 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261226 Gene

Pathways & Interactions for ENSG00000261226 Gene

PathCards logo

SuperPathways for ENSG00000261226 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261226 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261226 Gene

Drugs & Compounds for ENSG00000261226 Gene

No Compound Related Data Available

Transcripts for ENSG00000261226 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261226 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042A738_9606 lncRNA 531 4

Ensembl: ENST00000561980 (view in UCSC) ,

LncBook: HSALNT0235388,

LNCipedia: lnc-PABPN1L-1:2,

NONCODE: NONHSAT144454.2,

URS0000028D66_9606 lncRNA 2873 3

Ensembl: ENST00000564646 (view in UCSC) ,

LNCipedia: lnc-PABPN1L-1:1,

NONCODE: NONHSAT144455.2,

ENSG00000261226 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261226 Gene

No ASD Table

Relevant External Links for ENSG00000261226 Gene

GeneLoc Exon Structure for
ENSG00000261226

No data available for mRNA/cDNA for ENSG00000261226 Gene

Expression for ENSG00000261226 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261226 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261226 Gene

This gene is overexpressed in Brain - Cerebellum (x7.9), Brain - Cerebellar Hemisphere (x7.8), and Testis (x6.5).
genes like me logo Genes that share expression patterns with ENSG00000261226: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261226 Gene

Orthologs for ENSG00000261226 Gene

Evolution for ENSG00000261226 Gene

ENSEMBL:
Gene Tree for ENSG00000261226 (if available)
TreeFam:
Gene Tree for ENSG00000261226 (if available)

No data available for Orthologs for ENSG00000261226 Gene

Paralogs for ENSG00000261226 Gene

No data available for Paralogs for ENSG00000261226 Gene

Variants for ENSG00000261226 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261226 Gene

Disorders for ENSG00000261226 Gene

No disorders were found for ENSG00000261226 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000261226 Gene

Publications for ENSG00000261226 Gene

No publications were found for ENSG00000261226 Gene.

No data available for Mastermind for ENSG00000261226 Gene

Products for ENSG00000261226 Gene

Sources for ENSG00000261226 Gene