Aliases for ENSG00000261189 Gene

Subcategory (RNA class) for ENSG00000261189 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000261189 Gene

  • Novel Transcript, Antisense To DSP 5
  • NONHSAG042957.2 91
  • HSALNG0047891 164
  • Lnc-CAGE1-1 165
  • AL031058.1 5

External Ids for ENSG00000261189 Gene

Summaries for ENSG00000261189 Gene

GeneCards Summary for ENSG00000261189 Gene

ENSG00000261189 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261189 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261189 Gene

Genomics for ENSG00000261189 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261189 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J007536 Promoter/Enhancer 2.7 VISTA EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 8.8 -3.2 -3171 18.8 RNF2 HNRNPL GATAD2A ZBTB33 TEAD4 PRDM10 ZNF629 REST TFE3 SOX13 DSP SNRNP48 ENSG00000238221 RIOK1 SLC35B3 ENSG00000234115 TXNDC5 SSR1 BLOC1S5 RREB1
GH06J007974 Enhancer 1.2 ENCODE dbSUPER 6.2 -432.6 -432617 2.8 HNRNPL GATAD2A PRDM10 ZNF629 TFE3 LEF1 SOX13 IKZF1 NFKBIZ ZNF692 BMP6 ENSG00000261189 TXNDC5 PIP5K1P1 piR-48222-302 BLOC1S5-TXNDC5 BLOC1S5
GH06J007527 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 5 +14.1 14071 2.6 RNF2 CREB1 FOS BHLHE40 EGR2 CHD1 ENSG00000234115 SNRNP48 SSR1 ENSG00000238221 ENSG00000261189 RF00017-5235 DSP piR-57460-567 RIOK1
GH06J007535 Enhancer 0.4 Ensembl dbSUPER 5.5 +7.1 7116 1.6 ZNF121 ENSG00000234115 ENSG00000261189 RF00017-5235 DSP RIOK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261189 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261189 Gene

Genomic Locations for ENSG00000261189 Gene
chr6:7,539,834-7,543,117
(GRCh38/hg38)
Size:
3,284 bases
Orientation:
Minus strand
chr6:7,540,684-7,541,571
(GRCh37/hg19)
Size:
888 bases
Orientation:
Minus strand

Genomic View for ENSG00000261189 Gene

Genes around ENSG00000261189 on UCSC Golden Path with GeneCards custom track
ENSG00000261189 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261189 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261189 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261189 Gene

Proteins for ENSG00000261189 Gene

Post-translational modifications for ENSG00000261189 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261189 Gene

Domains & Families for ENSG00000261189 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261189 Gene

Function for ENSG00000261189 Gene

Phenotypes From GWAS Catalog for ENSG00000261189 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261189 Gene

Localization for ENSG00000261189 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261189 Gene

Pathways & Interactions for ENSG00000261189 Gene

PathCards logo

SuperPathways for ENSG00000261189 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261189 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261189 Gene

Drugs & Compounds for ENSG00000261189 Gene

No Compound Related Data Available

Transcripts for ENSG00000261189 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261189 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000236959_9606 lncRNA 888 3

Ensembl: ENST00000561592 (view in UCSC) ,

LNCipedia: lnc-CAGE1-1:1,

NONCODE: NONHSAT107609.2,

URS0000D5BCA1_9606 lncRNA 1402 2

LncBook: HSALNT0100891,

LNCipedia: lnc-CAGE1-1:11,

URS0000D5971F_9606 lncRNA 1292 2

LncBook: HSALNT0100892,

LNCipedia: lnc-CAGE1-1:6,

URS00008B2014_9606 lncRNA 821 2

LNCipedia: lnc-CAGE1-1:3,

NONCODE: NONHSAT107608.2,

URS00008B4A0D_9606 lncRNA 603 2

LNCipedia: lnc-CAGE1-1:2,

NONCODE: NONHSAT107610.2,

ENSG00000261189 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261189 Gene

No ASD Table

Relevant External Links for ENSG00000261189 Gene

GeneLoc Exon Structure for
ENSG00000261189

No data available for mRNA/cDNA for ENSG00000261189 Gene

Expression for ENSG00000261189 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261189 Gene

This gene is overexpressed in Heart - Left Ventricle (x7.9), Heart - Atrial Appendage (x7.2), Skin - Not Sun Exposed (Suprapubic) (x5.9), and Skin - Sun Exposed (Lower leg) (x4.8).

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261189 Gene

Orthologs for ENSG00000261189 Gene

Evolution for ENSG00000261189 Gene

ENSEMBL:
Gene Tree for ENSG00000261189 (if available)
TreeFam:
Gene Tree for ENSG00000261189 (if available)

No data available for Orthologs for ENSG00000261189 Gene

Paralogs for ENSG00000261189 Gene

No data available for Paralogs for ENSG00000261189 Gene

Variants for ENSG00000261189 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261189 Gene

Disorders for ENSG00000261189 Gene

Additional Disease Information for ENSG00000261189

No disorders were found for ENSG00000261189 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261189 Gene

Publications for ENSG00000261189 Gene

No publications were found for ENSG00000261189 Gene.

No data available for Mastermind for ENSG00000261189 Gene

Products for ENSG00000261189 Gene

Sources for ENSG00000261189 Gene