Aliases for ENSG00000261055 Gene

Subcategory (RNA class) for ENSG00000261055 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000261055 Gene

  • Novel Transcript 5
  • NONHSAG002360.2 91
  • AL450468.2 5
  • Lnc-CSF1-1 165

External Ids for ENSG00000261055 Gene

Previous GeneCards Identifiers for ENSG00000261055 Gene

  • GC01P110438

Summaries for ENSG00000261055 Gene

GeneCards Summary for ENSG00000261055 Gene

ENSG00000261055 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000261055 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000261055 Gene

Genomics for ENSG00000261055 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000261055 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J109895 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 -0.1 -75 3.4 ARHGAP35 HNRNPL GATAD2A PRDM10 TFE3 RFX1 LEF1 SOX13 IKZF1 RCOR2 ENSG00000261055 CELSR2 ENSG00000235005 CSF1 LINC01768 EPS8L3
GH01J109891 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.1 -3052 2.2 TFE3 IKZF1 ZIC2 GABPA RUNX3 NFIC ZFHX2 SAP130 POLR2A ELF1 ENSG00000235005 SORT1 ENSG00000261055 CSF1 LINC01768 EPS8L3
GH01J109905 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.4 10367 1.1 LARP7 IKZF2 RCOR1 TRIM22 RELA EED YBX1 DPF2 RELB CTBP1 GNAI3 AMPD2 CSF1 ENSG00000261055 LINC01768 EPS8L3
GH01J109899 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +5.1 5118 2.8 CREB1 ATF7 PRDM10 ZNF629 TFE3 IKZF1 ZNF692 JUND MTA2 PHF21A GSTM3 CSF1 GNAI3 AMPD2 ENSG00000261055 LINC01768 EPS8L3
GH01J109907 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.5 12528 1.8 ZNF512 PRDM1 MTA1 SOX6 NR2C2 HDGF ZNF395 TAL1 HLTF HDAC2 CSF1 CYB561D1 ENSG00000261055 EPS8L3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000261055 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000261055 Gene

Genomic Locations for ENSG00000261055 Gene
chr1:109,895,973-109,904,431
(GRCh38/hg38)
Size:
8,459 bases
Orientation:
Plus strand
chr1:110,438,595-110,440,483
(GRCh37/hg19)
Size:
1,889 bases
Orientation:
Plus strand

Genomic View for ENSG00000261055 Gene

Genes around ENSG00000261055 on UCSC Golden Path with GeneCards custom track
ENSG00000261055 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000261055 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000261055 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000261055 Gene

Proteins for ENSG00000261055 Gene

Post-translational modifications for ENSG00000261055 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000261055 Gene

Domains & Families for ENSG00000261055 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000261055 Gene

Function for ENSG00000261055 Gene

Phenotypes From GWAS Catalog for ENSG00000261055 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000261055 Gene

Localization for ENSG00000261055 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000261055 Gene

Pathways & Interactions for ENSG00000261055 Gene

PathCards logo

SuperPathways for ENSG00000261055 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000261055 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000261055 Gene

Drugs & Compounds for ENSG00000261055 Gene

No Compound Related Data Available

Transcripts for ENSG00000261055 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000261055 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004D00B6_9606 lncRNA 1889 3

Ensembl: ENST00000565955 (view in UCSC) ,

LNCipedia: lnc-CSF1-1:1,

NONCODE: NONHSAT005075.2,

URS0000D5BE30_9606 lncRNA 1663 1

LNCipedia: lnc-CSF1-1:2,

URS0000D571BE_9606 lncRNA 1047 1

LNCipedia: lnc-CSF1-1:3,

ENSG00000261055 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000261055 Gene

No ASD Table

Relevant External Links for ENSG00000261055 Gene

GeneLoc Exon Structure for
ENSG00000261055

No data available for mRNA/cDNA for ENSG00000261055 Gene

Expression for ENSG00000261055 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000261055 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000261055 Gene

This gene is overexpressed in Whole Blood (x19.7) and Adrenal Gland (x6.7).
genes like me logo Genes that share expression patterns with ENSG00000261055: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000261055 Gene

Orthologs for ENSG00000261055 Gene

Evolution for ENSG00000261055 Gene

ENSEMBL:
Gene Tree for ENSG00000261055 (if available)
TreeFam:
Gene Tree for ENSG00000261055 (if available)

No data available for Orthologs for ENSG00000261055 Gene

Paralogs for ENSG00000261055 Gene

No data available for Paralogs for ENSG00000261055 Gene

Variants for ENSG00000261055 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000261055 Gene

Disorders for ENSG00000261055 Gene

Additional Disease Information for ENSG00000261055

No disorders were found for ENSG00000261055 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000261055 Gene

Publications for ENSG00000261055 Gene

No publications were found for ENSG00000261055 Gene.

No data available for Mastermind for ENSG00000261055 Gene

Products for ENSG00000261055 Gene

Sources for ENSG00000261055 Gene