Aliases for ENSG00000260971 Gene

Subcategory (RNA class) for ENSG00000260971 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260971 Gene

  • Novel Transcript 5
  • NONHSAG001587.2 91
  • NONHSAG001584.2 91
  • HSALNG0003852 164
  • HSALNG0003866 164
  • Lnc-PLPP3-12 165
  • AC119674.1 5

External Ids for ENSG00000260971 Gene

Previous GeneCards Identifiers for ENSG00000260971 Gene

  • GC01M056713
  • GC01M056248

Summaries for ENSG00000260971 Gene

GeneCards Summary for ENSG00000260971 Gene

ENSG00000260971 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260971 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260971 Gene

Genomics for ENSG00000260971 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260971 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J056476 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 600.7 +0.1 87 1.6 GATAD2A RELA RBFOX2 IKZF2 SP1 SOX13 DPF2 RELB GATAD2B USF1 ENSG00000260971 RF00017-223 ENSG00000284686
GH01J056479 Promoter 0.5 Ensembl 600.7 -1.6 -1614 0.6 CEBPA ZMYM3 ENSG00000260971 lnc-FYB2-5 ENSG00000284686
GH01J056478 Promoter 0.4 Ensembl 600.7 -1.0 -1014 0.2 MLLT1 ENSG00000260971 lnc-FYB2-5 ENSG00000284686
GH01J056188 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.8 +287.4 287448 4.1 GATAD2A CTCF ATF7 TFE3 SOX13 NFKBIZ RCOR2 ZNF7 ZSCAN4 RBFOX2 ENSG00000235612 ENSG00000260971 lnc-PRKAA2-10 RPSAP20 ENSG00000284686 USP24
GH01J056199 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.8 +277.1 277085 2.8 TCF7L2 STAT1 PRDM4 RCOR1 MAFK GLIS1 FOS SMARCA4 CTCF PKNOX1 ENSG00000260971 RPSAP20 lnc-PRKAA2-10 ENSG00000284686 USP24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260971 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260971 Gene

Genomic Locations for ENSG00000260971 Gene
chr1:56,154,545-56,477,687
(GRCh38/hg38)
Size:
323,143 bases
Orientation:
Minus strand
chr1:56,713,966-56,724,243
(GRCh37/hg19)
Size:
10,278 bases
Orientation:
Minus strand

Genomic View for ENSG00000260971 Gene

Genes around ENSG00000260971 on UCSC Golden Path with GeneCards custom track
ENSG00000260971 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260971 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260971 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260971 Gene

Proteins for ENSG00000260971 Gene

Post-translational modifications for ENSG00000260971 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260971 Gene

Domains & Families for ENSG00000260971 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260971 Gene

Function for ENSG00000260971 Gene

Phenotypes From GWAS Catalog for ENSG00000260971 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260971 Gene

Localization for ENSG00000260971 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260971 Gene

Pathways & Interactions for ENSG00000260971 Gene

PathCards logo

SuperPathways for ENSG00000260971 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260971 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260971 Gene

Drugs & Compounds for ENSG00000260971 Gene

No Compound Related Data Available

Transcripts for ENSG00000260971 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260971 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005686F4_9606 lncRNA 1351 3

Ensembl: ENST00000569425 (view in UCSC) ,

LNCipedia: lnc-PLPP3-12:18,

NONCODE: NONHSAT003441.2,

URS0000BCFC84_9606 lncRNA 512 3

Ensembl: ENST00000641914 (view in UCSC) ,

LncBook: HSALNT0007250,

LNCipedia: lnc-PLPP3-12:28,

URS0000BDE812_9606 lncRNA 1860 2

Ensembl: ENST00000641333 (view in UCSC) ,

LNCipedia: lnc-PLPP3-12:26,

URS0000BC6504_9606 lncRNA 1386 2

Ensembl: ENST00000641177 (view in UCSC) ,

LNCipedia: lnc-PLPP3-12:13,

URS0000BC4EEE_9606 lncRNA 1343 2

Ensembl: ENST00000641348 (view in UCSC) ,

LNCipedia: lnc-PLPP3-12:23,

ENSG00000260971 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260971 Gene

No ASD Table

Relevant External Links for ENSG00000260971 Gene

GeneLoc Exon Structure for
ENSG00000260971

No data available for mRNA/cDNA for ENSG00000260971 Gene

Expression for ENSG00000260971 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260971 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260971 Gene

This gene is overexpressed in Muscle - Skeletal (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000260971: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260971 Gene

Orthologs for ENSG00000260971 Gene

Evolution for ENSG00000260971 Gene

ENSEMBL:
Gene Tree for ENSG00000260971 (if available)
TreeFam:
Gene Tree for ENSG00000260971 (if available)

No data available for Orthologs for ENSG00000260971 Gene

Paralogs for ENSG00000260971 Gene

No data available for Paralogs for ENSG00000260971 Gene

Variants for ENSG00000260971 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260971 Gene

Disorders for ENSG00000260971 Gene

No disorders were found for ENSG00000260971 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260971 Gene

Publications for ENSG00000260971 Gene

No publications were found for ENSG00000260971 Gene.

No data available for Mastermind for ENSG00000260971 Gene

Products for ENSG00000260971 Gene

Sources for ENSG00000260971 Gene