Aliases for ENSG00000260971 Gene

Subcategory (RNA class) for ENSG00000260971 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000260971 Gene

  • Novel Transcript 5
  • NONHSAG001587 94
  • HSALNG0003866 169
  • HSALNG0003852 169
  • NONHSAG001584 94
  • Lnc-PLPP3-12 170
  • AC119674.1 5

External Ids for ENSG00000260971 Gene

Previous GeneCards Identifiers for ENSG00000260971 Gene

  • GC01M056713
  • GC01M056248

Summaries for ENSG00000260971 Gene

GeneCards Summary for ENSG00000260971 Gene

ENSG00000260971 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260971 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260971 Gene

Genomics for ENSG00000260971 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260971 Gene

Promoters and enhancers for ENSG00000260971 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J056476 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 750.6 +0.1 87 1.6 RBPJ NR2F6 NFYC RELA RAD21 ZNF652 POLR2A SP1 MLLT1 HNF1A ENSG00000260971 RF00017-223 ENSG00000284686
GH01J056479 Promoter 0.4 Ensembl 750.6 -1.6 -1614 0.6 CEBPA ENSG00000260971 lnc-FYB2-5 ENSG00000284686
GH01J056478 Promoter 0.4 Ensembl 750.6 -1.0 -1014 0.2 MLLT1 ENSG00000260971 lnc-FYB2-5 ENSG00000284686
GH01J056188 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.8 +287.4 287448 4.1 LCORL MLX RBPJ NR2F1 NR2F6 ATF1 CREB1 MIXL1 HLF ZNF652 ENSG00000235612 ENSG00000260971 lnc-PRKAA2-10 RPSAP20 ENSG00000284686
GH01J056199 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.8 +277.1 277085 2.8 PKNOX1 TCF7L2 LEF1 STAT1 PRDM4 RCOR1 FOS MAFK GLIS1 ENSG00000260971 RPSAP20 lnc-PRKAA2-10 ENSG00000284686
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260971 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260971 Gene

Genomic Locations for ENSG00000260971 Gene
chr1:56,154,545-56,477,687
(GRCh38/hg38)
Size:
323,143 bases
Orientation:
Minus strand
chr1:56,713,966-56,724,243
(GRCh37/hg19)
Size:
10,278 bases
Orientation:
Minus strand

Genomic View for ENSG00000260971 Gene

Genes around ENSG00000260971 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260971 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260971 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260971 Gene

Proteins for ENSG00000260971 Gene

Post-translational modifications for ENSG00000260971 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260971 Gene

Domains & Families for ENSG00000260971 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260971 Gene

Function for ENSG00000260971 Gene

Phenotypes From GWAS Catalog for ENSG00000260971 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260971 Gene

Localization for ENSG00000260971 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260971 Gene

Pathways & Interactions for ENSG00000260971 Gene

PathCards logo

SuperPathways for ENSG00000260971 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260971 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000260971 Gene

Drugs & Compounds for ENSG00000260971 Gene

No Compound Related Data Available

Transcripts for ENSG00000260971 Gene

mRNA/cDNA for ENSG00000260971 Gene

(24) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(31) RNACentral transcripts :
(30) LNCipedia transcripts :
(7) NONCODE transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260971 Gene

No ASD Table

Relevant External Links for ENSG00000260971 Gene

GeneLoc Exon Structure for
ENSG00000260971

Expression for ENSG00000260971 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000260971 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260971 Gene

This gene is overexpressed in Muscle - Skeletal (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000260971: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260971 Gene

Orthologs for ENSG00000260971 Gene

Evolution for ENSG00000260971 Gene

ENSEMBL:
Gene Tree for ENSG00000260971 (if available)
TreeFam:
Gene Tree for ENSG00000260971 (if available)

No data available for Orthologs for ENSG00000260971 Gene

Paralogs for ENSG00000260971 Gene

No data available for Paralogs for ENSG00000260971 Gene

Variants for ENSG00000260971 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260971 Gene

Disorders for ENSG00000260971 Gene

No disorders were found for ENSG00000260971 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260971 Gene

Publications for ENSG00000260971 Gene

No publications were found for ENSG00000260971 Gene.

No data available for External Links for ENSG00000260971 Gene

Products for ENSG00000260971 Gene

Sources for ENSG00000260971 Gene