Aliases for ENSG00000260918 Gene

Subcategory (RNA class) for ENSG00000260918 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000260918 Gene

  • Novel Transcript, Overlapping GABRB1 5
  • NONHSAG037878.2 91
  • Lnc-GABRB1-1 165
  • AC107398.3 5

External Ids for ENSG00000260918 Gene

Summaries for ENSG00000260918 Gene

GeneCards Summary for ENSG00000260918 Gene

ENSG00000260918 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260918 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260918 Gene

Genomics for ENSG00000260918 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260918 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J047431 Enhancer 0.3 Ensembl 600.7 -0.1 -59 0.6 ZNF316 MAFK ENSG00000260918 COMMD8 piR-36437-004 GABRA4 GABRB1
GH04J047031 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 5 -400.1 -400059 2.6 GATAD2A CTCF RFX5 RAD21 TRIM22 YY1 SCRT2 NRF1 ZBTB20 ZSCAN29 GABRB1 ENSG00000260918 HSALNG0034230 GABRA4 LOC105374442 COMMD8
GH04J047074 Enhancer 0.4 Ensembl 5.3 -356.1 -356060 2.6 CEBPB EP300 JUN ENSG00000260918 LOC105374442 HSALNG0034230 GABRA4 GABRB1 COMMD8
GH04J047050 Enhancer 0.4 Ensembl 4.5 -380.9 -380859 1 POLR2A SPI1 SMARCA4 NANOG ENSG00000260918 HSALNG0034230 LOC105374442 GABRA4 GABRB1 COMMD8
GH04J047270 Enhancer 0.2 Ensembl 4.8 -161.4 -161359 0.8 ENSG00000260918 piR-58308-230 LOC107986276 COMMD8 GABRA4 GABRB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260918 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260918 Gene

Genomic Locations for ENSG00000260918 Gene
chr4:47,431,960-47,438,959
(GRCh38/hg38)
Size:
7,000 bases
Orientation:
Plus strand
chr4:47,433,977-47,440,976
(GRCh37/hg19)
Size:
7,000 bases
Orientation:
Plus strand

Genomic View for ENSG00000260918 Gene

Genes around ENSG00000260918 on UCSC Golden Path with GeneCards custom track
ENSG00000260918 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260918 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260918 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260918 Gene

Proteins for ENSG00000260918 Gene

Post-translational modifications for ENSG00000260918 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260918 Gene

Domains & Families for ENSG00000260918 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260918 Gene

Function for ENSG00000260918 Gene

Phenotypes From GWAS Catalog for ENSG00000260918 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260918 Gene

Localization for ENSG00000260918 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260918 Gene

Pathways & Interactions for ENSG00000260918 Gene

PathCards logo

SuperPathways for ENSG00000260918 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260918 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260918 Gene

Drugs & Compounds for ENSG00000260918 Gene

No Compound Related Data Available

Transcripts for ENSG00000260918 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260918 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004FB233_9606 lncRNA 7000 3

Ensembl: ENST00000562284 (view in UCSC) ,

LNCipedia: lnc-GABRB1-1:1,

NONCODE: NONHSAT096249.2,

URS00008BE170_9606 lncRNA 1943 1

LNCipedia: lnc-GABRB1-1:2,

ENSG00000260918 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260918 Gene

No ASD Table

Relevant External Links for ENSG00000260918 Gene

GeneLoc Exon Structure for
ENSG00000260918

No data available for mRNA/cDNA for ENSG00000260918 Gene

Expression for ENSG00000260918 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260918 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260918 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x7.9), Brain - Anterior cingulate cortex (BA24) (x5.6), Brain - Caudate (basal ganglia) (x5.5), Brain - Frontal Cortex (BA9) (x5.1), Brain - Amygdala (x4.9), Brain - Hypothalamus (x4.6), Brain - Putamen (basal ganglia) (x4.3), and Brain - Cortex (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000260918: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260918 Gene

Orthologs for ENSG00000260918 Gene

Evolution for ENSG00000260918 Gene

ENSEMBL:
Gene Tree for ENSG00000260918 (if available)
TreeFam:
Gene Tree for ENSG00000260918 (if available)

No data available for Orthologs for ENSG00000260918 Gene

Paralogs for ENSG00000260918 Gene

No data available for Paralogs for ENSG00000260918 Gene

Variants for ENSG00000260918 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260918 Gene

Disorders for ENSG00000260918 Gene

Additional Disease Information for ENSG00000260918

No disorders were found for ENSG00000260918 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260918 Gene

Publications for ENSG00000260918 Gene

No publications were found for ENSG00000260918 Gene.

No data available for Mastermind for ENSG00000260918 Gene

Products for ENSG00000260918 Gene

Sources for ENSG00000260918 Gene