Aliases for ENSG00000260907 Gene

Subcategory (RNA class) for ENSG00000260907 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260907 Gene

  • Novel Transcript 5
  • NONHSAG021161.2 91
  • HSALNG0115197 164
  • Lnc-LGALS9B-1 165
  • AC015818.2 5

External Ids for ENSG00000260907 Gene

Previous GeneCards Identifiers for ENSG00000260907 Gene

  • GC17M020433

Summaries for ENSG00000260907 Gene

GeneCards Summary for ENSG00000260907 Gene

ENSG00000260907 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260907 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260907 Gene

Genomics for ENSG00000260907 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260907 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J020531 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 607.1 -0.4 -414 4 PRDM10 ZNF512 IKZF1 ZNF692 PRDM1 ZIC2 PATZ1 ZNF600 ZNF341 SP2 ENSG00000260907 ENSG00000265916 LOC100996294 lnc-LGALS9B-10 piR-60051-040 AKAP10 ENSG00000264932 SPECC1 CDRT15L2 LGALS9B
GH17J020648 Enhancer 0.7 Ensembl 5.4 -118.2 -118214 4.8 SP1 BACH1 TCF12 IKZF2 ZNF341 ARID3A DPF2 RUNX3 OSR2 ARNT piR-60664-003 ENSG00000260907 ENSG00000236504 LOC729334 LOC105371583 CDRT15L2 USP22
GH17J020646 Enhancer 0.5 Ensembl 4.8 -114.7 -114711 0.6 CTCF ZBTB20 ZNF189 ZNF660 GLIS1 RAD21 MAFK ENSG00000236504 LOC729334 piR-60664-003 ENSG00000260907 piR-35674-211 CDRT15L2 USP22
GH17J020567 Enhancer 0.2 Ensembl 4.4 -35.1 -35114 0.2 piR-42913 ENSG00000260907 CDRT15L2 ENSG00000264422 LGALS9B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260907 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260907 Gene

Genomic Locations for ENSG00000260907 Gene
chr17:20,530,042-20,532,187
(GRCh38/hg38)
Size:
2,146 bases
Orientation:
Minus strand
chr17:20,433,355-20,434,194
(GRCh37/hg19)
Size:
840 bases
Orientation:
Minus strand

Genomic View for ENSG00000260907 Gene

Genes around ENSG00000260907 on UCSC Golden Path with GeneCards custom track
ENSG00000260907 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260907 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260907 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260907 Gene

Proteins for ENSG00000260907 Gene

Post-translational modifications for ENSG00000260907 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260907 Gene

Domains & Families for ENSG00000260907 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260907 Gene

Function for ENSG00000260907 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260907 Gene

Localization for ENSG00000260907 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260907 Gene

Pathways & Interactions for ENSG00000260907 Gene

PathCards logo

SuperPathways for ENSG00000260907 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260907 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260907 Gene

Drugs & Compounds for ENSG00000260907 Gene

No Compound Related Data Available

Transcripts for ENSG00000260907 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260907 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005C0030_9606 lncRNA 840 3

Ensembl: ENST00000563569 (view in UCSC) ,

LNCipedia: lnc-LGALS9B-1:1,

NONCODE: NONHSAT146583.2,

URS00009C2878_9606 lncRNA 364 2

LncBook: HSALNT0238427,

NONCODE: NONHSAT176038.1,

URS00009C5A0C_9606 lncRNA 293 2

LncBook: HSALNT0238428,

NONCODE: NONHSAT176039.1,

ENSG00000260907 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260907 Gene

No ASD Table

Relevant External Links for ENSG00000260907 Gene

GeneLoc Exon Structure for
ENSG00000260907

No data available for mRNA/cDNA for ENSG00000260907 Gene

Expression for ENSG00000260907 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260907 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260907 Gene

This gene is overexpressed in Testis (x38.1).
genes like me logo Genes that share expression patterns with ENSG00000260907: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260907 Gene

Orthologs for ENSG00000260907 Gene

Evolution for ENSG00000260907 Gene

ENSEMBL:
Gene Tree for ENSG00000260907 (if available)
TreeFam:
Gene Tree for ENSG00000260907 (if available)

No data available for Orthologs for ENSG00000260907 Gene

Paralogs for ENSG00000260907 Gene

No data available for Paralogs for ENSG00000260907 Gene

Variants for ENSG00000260907 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260907 Gene

Disorders for ENSG00000260907 Gene

Additional Disease Information for ENSG00000260907

No disorders were found for ENSG00000260907 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260907 Gene

Publications for ENSG00000260907 Gene

No publications were found for ENSG00000260907 Gene.

No data available for Mastermind for ENSG00000260907 Gene

Products for ENSG00000260907 Gene

Sources for ENSG00000260907 Gene