Aliases for ENSG00000260879 Gene

Subcategory (RNA class) for ENSG00000260879 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260879 Gene

  • Novel Transcript, Antisense To SLC25A24 5
  • NONHSAG002303.2 91
  • HSALNG0005799 164
  • Lnc-NBPF6-2 165
  • AL359258.2 5

External Ids for ENSG00000260879 Gene

Additional External Ids for ENSG00000260879 Gene

Previous GeneCards Identifiers for ENSG00000260879 Gene

  • GC01P108742

Summaries for ENSG00000260879 Gene

GeneCards Summary for ENSG00000260879 Gene

ENSG00000260879 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260879 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260879 Gene

Genomics for ENSG00000260879 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260879 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J108197 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.3 -270 3.9 CEBPG HNRNPL TEAD4 RFX1 IKZF1 CTCF ZNF692 BACH1 TARDBP ZHX2 SLC25A24 ENSG00000260879 ENSG00000280186 PRPF38B ENSG00000244716 LINC02785 FAM102B piR-36393-028 VAV3
GH01J108192 Promoter 0.5 EPDnew 0.4 -7.1 -7107 0.1 GTF2F1 ZBTB33 SLC25A24 ENSG00000260879 piR-36393-028 VAV3
GH01J108181 Enhancer 0.5 Ensembl 0.4 -17.1 -17125 2.4 ZNF10 ZNF217 SPI1 MAFK FOS MAFF FOSL2 SLC25A24 VAV3 VAV3-AS1 ENSG00000260879 piR-36393-028 MN308768
GH01J108194 Enhancer 0.3 Ensembl 0.4 -5.0 -5025 0.6 MNT DDX20 SLC25A24 ENSG00000260879 piR-36393-028 VAV3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260879 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260879 Gene

Genomic Locations for ENSG00000260879 Gene
chr1:108,199,926-108,204,378
(GRCh38/hg38)
Size:
4,453 bases
Orientation:
Plus strand
chr1:108,742,548-108,744,113
(GRCh37/hg19)
Size:
1,566 bases
Orientation:
Plus strand

Genomic View for ENSG00000260879 Gene

Genes around ENSG00000260879 on UCSC Golden Path with GeneCards custom track
ENSG00000260879 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260879 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260879 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260879 Gene

Proteins for ENSG00000260879 Gene

Post-translational modifications for ENSG00000260879 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260879 Gene

Domains & Families for ENSG00000260879 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260879 Gene

Function for ENSG00000260879 Gene

Phenotypes From GWAS Catalog for ENSG00000260879 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260879 Gene

Localization for ENSG00000260879 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260879 Gene

Pathways & Interactions for ENSG00000260879 Gene

PathCards logo

SuperPathways for ENSG00000260879 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260879 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260879 Gene

Drugs & Compounds for ENSG00000260879 Gene

No Compound Related Data Available

Transcripts for ENSG00000260879 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260879 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000530217_9606 lncRNA 1566 2

Ensembl: ENST00000564063 (view in UCSC) , ENST00000639425 (view in UCSC) ,

NONCODE: NONHSAT004977.2,

URS00008B3AF8_9606 lncRNA 2331 3

LncBook: HSALNT0012088,

LNCipedia: lnc-NBPF6-2:2,

NONCODE: NONHSAT004978.2,

URS0000D5DD10_9606 lncRNA 3966 1

LNCipedia: lnc-NBPF6-2:6,

URS0000D5A729_9606 lncRNA 2260 1

LNCipedia: lnc-NBPF6-2:3,

URS0000D5A6CC_9606 lncRNA 1047 1

LNCipedia: lnc-NBPF6-2:5,

ENSG00000260879 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260879 Gene

No ASD Table

Relevant External Links for ENSG00000260879 Gene

GeneLoc Exon Structure for
ENSG00000260879

No data available for mRNA/cDNA for ENSG00000260879 Gene

Expression for ENSG00000260879 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260879 Gene

genes like me logo Genes that share expression patterns with ENSG00000260879: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260879 Gene

Orthologs for ENSG00000260879 Gene

Evolution for ENSG00000260879 Gene

ENSEMBL:
Gene Tree for ENSG00000260879 (if available)
TreeFam:
Gene Tree for ENSG00000260879 (if available)

No data available for Orthologs for ENSG00000260879 Gene

Paralogs for ENSG00000260879 Gene

No data available for Paralogs for ENSG00000260879 Gene

Variants for ENSG00000260879 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260879 Gene

Disorders for ENSG00000260879 Gene

No disorders were found for ENSG00000260879 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260879 Gene

Publications for ENSG00000260879 Gene

No publications were found for ENSG00000260879 Gene.

No data available for Mastermind for ENSG00000260879 Gene

Products for ENSG00000260879 Gene

Sources for ENSG00000260879 Gene