Aliases for ENSG00000260850 Gene

Subcategory (RNA class) for ENSG00000260850 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260850 Gene

  • Novel Transcript 5
  • NONHSAG019450.2 91
  • NONHSAG019449.2 91
  • HSALNG0111402 164
  • Lnc-SALL1-6 165
  • AC007344.1 5

External Ids for ENSG00000260850 Gene

Previous GeneCards Identifiers for ENSG00000260850 Gene

  • GC16M051388

Summaries for ENSG00000260850 Gene

GeneCards Summary for ENSG00000260850 Gene

ENSG00000260850 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260850 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260850 Gene

Genomics for ENSG00000260850 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260850 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J051525 Enhancer 1 VISTA Ensembl 600.7 -0.5 -465 2.4 SP1 CTCF ATF3 FOS YY1 JUND FOSL2 POLR2A ZNF335 RAD21 ENSG00000260850 LOC102723323 lnc-HNRNPA1P48-6 SALL1 piR-35672-021
GH16J051523 Enhancer 0.3 ENCODE 600.7 +1.9 1899 0.1 EZH2 NFE2L2 ENSG00000260850 lnc-HNRNPA1P48-6 LOC102723323 piR-40110-250 SALL1
GH16J051457 Enhancer 0.8 VISTA UCNEbase Ensembl 0.2 +67.1 67078 1.3 piR-41306-104 piR-37895-069 ENSG00000260850 LOC102723323 SALL1
GH16J051431 Enhancer 0.9 Ensembl ENCODE 0.2 +93.7 93740 1.6 PRDM10 ZNF629 TOE1 ZBTB44 ZXDB CEBPB TSHZ1 RAD51 OSR2 ZNF580 piR-41306-104 LOC105371256 ENSG00000260850 LOC102723323 ENSG00000285367 SALL1
GH16J051440 Enhancer 0.6 ENCODE CraniofacialAtlas 0.2 +84.7 84741 1.4 CTCF SMARCA4 EZH2 JUND piR-41306-104 LOC105371256 ENSG00000260850 LOC102723323 SALL1 ENSG00000285367
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260850 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260850 Gene

Genomic Locations for ENSG00000260850 Gene
chr16:51,354,456-51,525,536
(GRCh38/hg38)
Size:
171,081 bases
Orientation:
Minus strand
chr16:51,388,367-51,390,443
(GRCh37/hg19)
Size:
2,077 bases
Orientation:
Minus strand

Genomic View for ENSG00000260850 Gene

Genes around ENSG00000260850 on UCSC Golden Path with GeneCards custom track
ENSG00000260850 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260850 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260850 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260850 Gene

Proteins for ENSG00000260850 Gene

Post-translational modifications for ENSG00000260850 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260850 Gene

Domains & Families for ENSG00000260850 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260850 Gene

Function for ENSG00000260850 Gene

Phenotypes From GWAS Catalog for ENSG00000260850 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260850 Gene

Localization for ENSG00000260850 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260850 Gene

Pathways & Interactions for ENSG00000260850 Gene

PathCards logo

SuperPathways for ENSG00000260850 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260850 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260850 Gene

Drugs & Compounds for ENSG00000260850 Gene

No Compound Related Data Available

Transcripts for ENSG00000260850 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260850 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000037704B_9606 lncRNA 456 4

Ensembl: ENST00000569751 (view in UCSC) ,

LncBook: HSALNT0230931,

LNCipedia: lnc-SALL1-6:7,

NONCODE: NONHSAT142473.2,

URS0000D64371_9606 lncRNA 1612 2

Ensembl: ENST00000646267 (view in UCSC) ,

LNCipedia: lnc-SALL1-6:6,

URS0000D620E4_9606 lncRNA 1476 2

Ensembl: ENST00000643262 (view in UCSC) ,

LNCipedia: lnc-SALL1-6:5,

URS00008B56B0_9606 lncRNA 1963 3

LncBook: HSALNT0230941,

LNCipedia: lnc-SALL1-6:2,

NONCODE: NONHSAT142474.2,

URS00008B5A43_9606 lncRNA 1339 3

LncBook: HSALNT0230942,

LNCipedia: lnc-SALL1-6:4,

NONCODE: NONHSAT142475.2,

ENSG00000260850 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260850 Gene

No ASD Table

Relevant External Links for ENSG00000260850 Gene

GeneLoc Exon Structure for
ENSG00000260850

No data available for mRNA/cDNA for ENSG00000260850 Gene

Expression for ENSG00000260850 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260850 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260850 Gene

This gene is overexpressed in Pituitary (x17.3), Liver (x12.4), Kidney - Cortex (x7.2), and Brain - Spinal cord (cervical c-1) (x5.2).
genes like me logo Genes that share expression patterns with ENSG00000260850: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260850 Gene

Orthologs for ENSG00000260850 Gene

Evolution for ENSG00000260850 Gene

ENSEMBL:
Gene Tree for ENSG00000260850 (if available)
TreeFam:
Gene Tree for ENSG00000260850 (if available)

No data available for Orthologs for ENSG00000260850 Gene

Paralogs for ENSG00000260850 Gene

No data available for Paralogs for ENSG00000260850 Gene

Variants for ENSG00000260850 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260850 Gene

Disorders for ENSG00000260850 Gene

Additional Disease Information for ENSG00000260850

No disorders were found for ENSG00000260850 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260850 Gene

Publications for ENSG00000260850 Gene

No publications were found for ENSG00000260850 Gene.

No data available for Mastermind for ENSG00000260850 Gene

Products for ENSG00000260850 Gene

Sources for ENSG00000260850 Gene