Aliases for ENSG00000260806 Gene

Data sources for ENSG00000260806 Gene:

Subcategory (RNA class) for ENSG00000260806 Gene

lncRNA

Aliases for ENSG00000260806 Gene

External Ids for ENSG00000260806 Gene

Previous GeneCards Identifiers for ENSG00000260806 Gene

  • GC14M096968
  • GC14M096503
  • GC14M096505

Summaries for ENSG00000260806 Gene

GeneCards Summary for ENSG00000260806 Gene

ENSG00000260806 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260806 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260806 Gene

Genomics for ENSG00000260806 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260806 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J096500 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 264.3 -0.4 -446 4 TBP ZBTB10 MXD4 FEZF1 SIX5 MNT IKZF1 SMAD5 ETS1 MBD2 PAPOLA ENSG00000260806 NONHSAG015829.2-001 PAPOLA-DT hsa-miR-5095-139 SNHG10 SCARNA13 VRK1
GH14J096573 Enhancer 1 Ensembl ENCODE 12.4 -71.8 -71846 2.8 FEZF1 ZNF610 ZNF341 RXRA ZNF843 KLF9 FOXA2 PRDM6 KLF16 ZNF2 ENSG00000258702 PAPOLA ENSG00000260806 ATG2B NONHSAG015832.2 VRK1
GH14J097378 Enhancer 0.9 Ensembl ENCODE 5.1 -878.5 -878545 6.2 BCL11A EBF1 CTBP1 JUND BHLHE40 RFX5 BATF ZNF24 BMI1 CHD1 ENSG00000260806 HSALNG0103558 piR-34344 VRK1
GH14J097386 Enhancer 0.7 Ensembl 4.7 -885.5 -885546 2.2 BCL11A IRF4 BATF IKZF1 TCF7 NR2F1 JUNB TCF12 ATF7 SPI1 ENSG00000260806 HSALNG0103558 HSALNG0103560 VRK1
GH14J096566 Enhancer 0.4 UCNEbase 6.9 -64.6 -64618 0.2 CTCF ENSG00000260806 ENSG00000258702 NONHSAG015832.2 PAPOLA VRK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260806 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260806 Gene

Latest Assembly
chr14:96,500,447-96,502,355
(GRCh38/hg38)
Size:
1,909 bases
Orientation:
Minus strand

Previous Assembly
chr14:96,967,147-96,968,658
(GRCh37/hg19 by Ensembl)
Size:
1,512 bases
Orientation:
Minus strand

Genomic View for ENSG00000260806 Gene

Genes around ENSG00000260806 on UCSC Golden Path with GeneCards custom track
ENSG00000260806 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260806 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260806 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260806 Gene

Proteins for ENSG00000260806 Gene

Post-translational modifications for ENSG00000260806 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260806 Gene

Domains & Families for ENSG00000260806 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260806 Gene

Function for ENSG00000260806 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260806 Gene

Localization for ENSG00000260806 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260806 Gene

Pathways & Interactions for ENSG00000260806 Gene

PathCards logo

SuperPathways for ENSG00000260806 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260806 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260806 Gene

Drugs & Compounds for ENSG00000260806 Gene

No Compound Related Data Available

Transcripts for ENSG00000260806 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260806 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F3556_9606 lncRNA 1512 2

Ensembl: ENST00000569214 (view in UCSC) ,

LNCipedia: lnc-ATG2B-16:3,

URS000075E594_9606 lncRNA 679 1

RefSeq: NR_122121,

URS00008B63F9_9606 lncRNA 1614 2

LNCipedia: lnc-ATG2B-16:4,

NONCODE: NONHSAT039529.2,

URS0000D5A7C2_9606 lncRNA 1365 2

LncBook: HSALNT0215341,

LNCipedia: lnc-ATG2B-16:6,

URS0001BED110_9606 lncRNA 1909 1

LncBook: HSALNT0215340,

ENSG00000260806 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260806 Gene

No ASD Table

Relevant External Links for ENSG00000260806 Gene

GeneLoc Exon Structure for
ENSG00000260806

No data available for mRNA/cDNA for ENSG00000260806 Gene

Expression for ENSG00000260806 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260806 Gene

This gene is overexpressed in Testis (x9.1).

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260806 Gene

Orthologs for ENSG00000260806 Gene

Evolution for ENSG00000260806 Gene

ENSEMBL:
Gene Tree for ENSG00000260806 (if available)
TreeFam:
Gene Tree for ENSG00000260806 (if available)

No data available for Orthologs for ENSG00000260806 Gene

Paralogs for ENSG00000260806 Gene

No data available for Paralogs for ENSG00000260806 Gene

Variants for ENSG00000260806 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260806 Gene

Disorders for ENSG00000260806 Gene

Additional Disease Information for ENSG00000260806

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000260806 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260806 Gene

Publications for ENSG00000260806 Gene

No publications were found for ENSG00000260806 Gene.

No data available for Mastermind for ENSG00000260806 Gene

Products for ENSG00000260806 Gene

Sources for ENSG00000260806 Gene