Aliases for ENSG00000260725 Gene

Subcategory (RNA class) for ENSG00000260725 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260725 Gene

  • Novel Transcript 5
  • NONHSAG025395.2 91
  • NONHSAG025391.2 91
  • Lnc-UQCRFS1-3 165
  • HSALNG0125160 164
  • AC005307.1 5

External Ids for ENSG00000260725 Gene

Previous GeneCards Identifiers for ENSG00000260725 Gene

  • GC19M028909

Summaries for ENSG00000260725 Gene

GeneCards Summary for ENSG00000260725 Gene

ENSG00000260725 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260725 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260725 Gene

Genomics for ENSG00000260725 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260725 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J028430 Enhancer 0.3 Ensembl 600.7 -1.6 -1611 0.6 USF1 ZNF18 ENSG00000260725 piR-37656-107 UQCRFS1
GH19J028424 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +4.1 4089 4.8 ZNF221 TEAD4 PRDM10 ZNF629 RFX5 KDM1A ZNF692 PRDM1 ZNF776 ZIC2 ENSG00000261770 ENSG00000267575 LINC00662 ENSG00000267423 ENSG00000260725 HSALNG0125159 UQCRFS1
GH19J028405 Enhancer 0.8 Ensembl 0.4 +23.5 23490 1.2 ZNF692 ZIC2 ZNF776 ZSCAN4 PATZ1 ZNF501 ZNF239 ZNF600 ZNF148 ZNF561 ENSG00000267575 ENSG00000261770 LINC00662 ENSG00000267264 ENSG00000267498 HSALNG0125159 ENSG00000260725 UQCRFS1
GH19J028420 Enhancer 0.6 Ensembl dbSUPER 0.4 +8.6 8589 0.6 POLR2A SCRT1 SUPT5H ENSG00000260725 HSALNG0125159 UQCRFS1
GH19J028408 Enhancer 0.7 Ensembl dbSUPER 0.4 +20.4 20431 0.4 HDAC1 EGR1 HDAC2 OSR2 ZNF384 RCOR1 KDM1A ESRRA HSALNG0125159 ENSG00000260725 UQCRFS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260725 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260725 Gene

Genomic Locations for ENSG00000260725 Gene
chr19:28,418,483-28,429,490
(GRCh38/hg38)
Size:
11,008 bases
Orientation:
Minus strand
chr19:28,909,390-28,920,397
(GRCh37/hg19)
Size:
11,008 bases
Orientation:
Minus strand

Genomic View for ENSG00000260725 Gene

Genes around ENSG00000260725 on UCSC Golden Path with GeneCards custom track
ENSG00000260725 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260725 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260725 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260725 Gene

Proteins for ENSG00000260725 Gene

Post-translational modifications for ENSG00000260725 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260725 Gene

Domains & Families for ENSG00000260725 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260725 Gene

Function for ENSG00000260725 Gene

Phenotypes From GWAS Catalog for ENSG00000260725 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260725 Gene

Localization for ENSG00000260725 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260725 Gene

Pathways & Interactions for ENSG00000260725 Gene

PathCards logo

SuperPathways for ENSG00000260725 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260725 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260725 Gene

Drugs & Compounds for ENSG00000260725 Gene

No Compound Related Data Available

Transcripts for ENSG00000260725 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260725 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004F805D_9606 lncRNA 1570 3

Ensembl: ENST00000567877 (view in UCSC) ,

LNCipedia: lnc-UQCRFS1-3:28,

NONCODE: NONHSAT064037.2,

URS00009AD0D0_9606 lncRNA 644 2

LncBook: HSALNT0257955,

NONCODE: NONHSAT180291.1,

URS0000D58021_9606 lncRNA 26219 1

LNCipedia: lnc-UQCRFS1-3:24,

URS0000D5C087_9606 lncRNA 20867 1

LNCipedia: lnc-UQCRFS1-3:15,

URS0000D5C26C_9606 lncRNA 14098 1

LNCipedia: lnc-UQCRFS1-3:17,

ENSG00000260725 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260725 Gene

No ASD Table

Relevant External Links for ENSG00000260725 Gene

GeneLoc Exon Structure for
ENSG00000260725

No data available for mRNA/cDNA for ENSG00000260725 Gene

Expression for ENSG00000260725 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260725 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260725 Gene

This gene is overexpressed in Pancreas (x32.2).
genes like me logo Genes that share expression patterns with ENSG00000260725: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260725 Gene

Orthologs for ENSG00000260725 Gene

Evolution for ENSG00000260725 Gene

ENSEMBL:
Gene Tree for ENSG00000260725 (if available)
TreeFam:
Gene Tree for ENSG00000260725 (if available)

No data available for Orthologs for ENSG00000260725 Gene

Paralogs for ENSG00000260725 Gene

No data available for Paralogs for ENSG00000260725 Gene

Variants for ENSG00000260725 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260725 Gene

Disorders for ENSG00000260725 Gene

Additional Disease Information for ENSG00000260725

No disorders were found for ENSG00000260725 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260725 Gene

Publications for ENSG00000260725 Gene

No publications were found for ENSG00000260725 Gene.

No data available for Mastermind for ENSG00000260725 Gene

Products for ENSG00000260725 Gene

Sources for ENSG00000260725 Gene