Aliases for ENSG00000260711 Gene

Subcategory (RNA class) for ENSG00000260711 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000260711 Gene

  • Novel Transcript, Intronic To CATSPERB 5
  • NONHSAG015732 92
  • HSALNG0103215 167
  • AL121839.2 5
  • Lnc-TC2N-1 168

External Ids for ENSG00000260711 Gene

Additional External Ids for ENSG00000260711 Gene

Previous GeneCards Identifiers for ENSG00000260711 Gene

  • GC14M092223
  • GC14M091753
  • GC14M092332
  • GC14M092428
  • GC14M092450
  • GC14M091754
  • GC14M091867
  • GC14M091976
  • GC14M092233

Summaries for ENSG00000260711 Gene

GeneCards Summary for ENSG00000260711 Gene

ENSG00000260711 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260711 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260711 Gene

Genomics for ENSG00000260711 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260711 Gene

Promoters and enhancers for ENSG00000260711 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J091864 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 9.4 -106.6 -106627 4.5 ZIC2 ZNF423 OSR2 EBF1 SCRT1 PRDM6 FEZF1 TBX21 ZNF24 INSM2 TC2N lnc-TC2N-2 FBLN5 ENSG00000260711 CATSPERB HSALNG0103222
GH14J091858 Enhancer 1 ENCODE dbSUPER 12.5 -98.9 -98943 0.9 CTCF ZSCAN5C FOS ZNF639 ZNF10 TRIM28 RFX1 REST RAD21 ZEB1 ENSG00000260711 CATSPERB TC2N lnc-TC2N-2 HSALNG0103222
GH14J091869 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 6.6 -113.2 -113185 7.5 TCF12 SP1 EP300 ZIC2 ATF2 TBX3 FOXA2 OSR2 BCL11A ZNF263 lnc-FBLN5-1 FBLN5 TC2N CATSPERB ENSG00000260711 lnc-TC2N-2
GH14J091360 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.5 +388.8 388753 21.8 EP300 ZSCAN5C SIN3A SP1 NCOR1 ZNF639 ZNF10 ZIC2 ZNF423 TRIM28 CCDC88C PPP4R3A ENSG00000258875 ENSG00000260711 ENSG00000213315 RPS6KA5 lnc-PPP4R3A-3 LOC105370624 lnc-GPR68-3
GH14J091839 Enhancer 0.4 Ensembl 15.8 -81.4 -81403 2.8 USF1 BATF SPI1 USF2 HSALNG0103222 ENSG00000260711 TC2N lnc-TC2N-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260711 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260711 Gene

Genomic Locations for ENSG00000260711 Gene
chr14:91,752,856-91,759,798
(GRCh38/hg38)
Size:
6,943 bases
Orientation:
Minus strand
chr14:92,223,103-92,226,142
(GRCh37/hg19)
Size:
3,040 bases
Orientation:
Minus strand

Genomic View for ENSG00000260711 Gene

Genes around ENSG00000260711 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260711 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260711 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260711 Gene

Proteins for ENSG00000260711 Gene

Post-translational modifications for ENSG00000260711 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260711 Gene

Domains & Families for ENSG00000260711 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260711 Gene

Function for ENSG00000260711 Gene

Phenotypes From GWAS Catalog for ENSG00000260711 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260711 Gene

Localization for ENSG00000260711 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260711 Gene

Pathways & Interactions for ENSG00000260711 Gene

PathCards logo

SuperPathways for ENSG00000260711 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260711 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260711 Gene

Drugs & Compounds for ENSG00000260711 Gene

No Compound Related Data Available

Transcripts for ENSG00000260711 Gene

mRNA/cDNA for ENSG00000260711 Gene

3 RNACentral transcripts :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260711 Gene

No ASD Table

Relevant External Links for ENSG00000260711 Gene

GeneLoc Exon Structure for
ENSG00000260711

Expression for ENSG00000260711 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260711 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260711 Gene

This gene is overexpressed in Pancreas (x10.1).
genes like me logo Genes that share expression patterns with ENSG00000260711: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260711 Gene

Orthologs for ENSG00000260711 Gene

Evolution for ENSG00000260711 Gene

ENSEMBL:
Gene Tree for ENSG00000260711 (if available)
TreeFam:
Gene Tree for ENSG00000260711 (if available)

No data available for Orthologs for ENSG00000260711 Gene

Paralogs for ENSG00000260711 Gene

No data available for Paralogs for ENSG00000260711 Gene

Variants for ENSG00000260711 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260711 Gene

Disorders for ENSG00000260711 Gene

No disorders were found for ENSG00000260711 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260711 Gene

Publications for ENSG00000260711 Gene

No publications were found for ENSG00000260711 Gene.

No data available for Mastermind for ENSG00000260711 Gene

Products for ENSG00000260711 Gene

Sources for ENSG00000260711 Gene