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Aliases for ENSG00000260708 Gene

Subcategory (RNA class) for ENSG00000260708 Gene

lncRNA

Quality Score for this RNA gene is

19

Aliases for ENSG00000260708 Gene

  • AL118516.1 5

External Ids for ENSG00000260708 Gene

Previous GeneCards Identifiers for ENSG00000260708 Gene

  • GC22M047157

Summaries for ENSG00000260708 Gene

GeneCards Summary for ENSG00000260708 Gene

ENSG00000260708 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ENSG00000260708 Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

View fRNAdb secondary structures for ENSG00000260708

Additional gene information for ENSG00000260708 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000260708 Gene

Genomics for ENSG00000260708 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260708 Gene

Promoters and enhancers for ENSG00000260708 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J046760 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 721.8 -0.5 -480 4.7 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 ENSG00000260708 TBC1D22A GC22M046764 CDPF1 LINC00899 LOC642648 GC22P046796 GC22P046797 GC22P046798 GC22P046799
GH22J046748 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 53 +10.8 10764 7.2 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ENSG00000260708 TTC38 TBC1D22A CERK GRAMD4 TRMU GC22M046764 GC22P046655
GH22J046757 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 51.2 +4.0 3995 2.8 ELF3 FOXA2 ARID4B ZNF2 RAD21 RARA ETS1 YY1 ZNF121 ZNF143 ENSG00000260708 TBC1D22A CERK GC22M046764
GH22J046733 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 20.1 +23.1 23063 11.5 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CERK LOC105373077 ENSG00000260708 GC22M046764 GC22P046685 GC22P046684 GC22P046655
GH22J046772 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 23.9 -12.9 -12885 5.4 HDGF PKNOX1 FOXA2 SMAD1 ARID4B DMAP1 ZNF2 IRF4 ZNF213 ZNF207 ENSG00000260708 TBC1D22A CERK GC22P046796 GC22P046797 GC22P046798 GC22P046799
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000260708 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260708 Gene

Genomic Locations for ENSG00000260708 Gene
chr22:46,761,894-46,762,563
(GRCh38/hg38)
Size:
670 bases
Orientation:
Minus strand
chr22:47,157,791-47,158,460
(GRCh37/hg19)
Size:
670 bases
Orientation:
Minus strand

Genomic View for ENSG00000260708 Gene

Genes around ENSG00000260708 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260708 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260708 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000260708 Gene

ORGUL Member Location for ENSG00000260708 gene

No data available for RefSeq DNA sequence for ENSG00000260708 Gene

Proteins for ENSG00000260708 Gene

Post-translational modifications for ENSG00000260708 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260708 Gene

Domains & Families for ENSG00000260708 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000260708 Gene

Function for ENSG00000260708 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260708 Gene

Localization for ENSG00000260708 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260708 Gene

Pathways & Interactions for ENSG00000260708 Gene

SuperPathways for ENSG00000260708 Gene

No Data Available

Interacting Proteins for ENSG00000260708 Gene

Gene Ontology (GO) - Biological Process for ENSG00000260708 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000260708 Gene

Drugs & Compounds for ENSG00000260708 Gene

No Compound Related Data Available

Transcripts for ENSG00000260708 Gene

fRNAdb Secondary structures for ENSG00000260708 Gene

  • CR613972

mRNA/cDNA for ENSG00000260708 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260708 Gene

No ASD Table

Relevant External Links for ENSG00000260708 Gene

GeneLoc Exon Structure for
ENSG00000260708

Expression for ENSG00000260708 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000260708 Gene

genes like me logo Genes that share expression patterns with ENSG00000260708: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260708 Gene

Orthologs for ENSG00000260708 Gene

Evolution for ENSG00000260708 Gene

ENSEMBL:
Gene Tree for ENSG00000260708 (if available)
TreeFam:
Gene Tree for ENSG00000260708 (if available)

No data available for Orthologs for ENSG00000260708 Gene

Paralogs for ENSG00000260708 Gene

No data available for Paralogs for ENSG00000260708 Gene

Variants for ENSG00000260708 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260708 Gene

Disorders for ENSG00000260708 Gene

No disorders were found for ENSG00000260708 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260708 Gene

Publications for ENSG00000260708 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for ENSG00000260708 Gene

Sources for ENSG00000260708 Gene

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