Aliases for ENSG00000260698 Gene

Subcategory (RNA class) for ENSG00000260698 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260698 Gene

  • Novel Transcript 5
  • NONHSAG004899.2 91
  • HSALNG0012195 164
  • AL591848.3 5
  • Lnc-CNST-1 165

External Ids for ENSG00000260698 Gene

Previous GeneCards Identifiers for ENSG00000260698 Gene

  • GC01P246845

Summaries for ENSG00000260698 Gene

GeneCards Summary for ENSG00000260698 Gene

ENSG00000260698 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260698 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260698 Gene

Genomics for ENSG00000260698 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260698 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J246679 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 606.2 -0.5 -511 5.2 RFX1 POLR2A EBF1 SMARCA4 MAX ENSG00000260698 LOC102724382 ENSG00000235021 LINC01341 SCCPDH lnc-TFB2M-5 CNST
GH01J246676 Enhancer 0.6 ENCODE 6.7 -4.4 -4448 1.8 ZNF629 TCF7L2 WT1 NR2F1 ZNF366 ZNF843 FEZF1 ATF3 PRDM6 SMARCA4 LINC01341 KIF28P ENSG00000260698 ENSG00000225300 LOC102724382 lnc-TFB2M-5 SCCPDH CNST
GH01J246694 Enhancer 0.5 Ensembl 4.8 +12.8 12793 1.4 MTA2 SOX6 ZNF444 TRIM28 TRIM24 SMARCE1 L3MBTL2 ENSG00000235021 SCCPDH ENSG00000260698 piR-38423-003 CNST
GH01J246674 Enhancer 0.2 Ensembl 5.7 -7.7 -7707 0.4 ENSG00000235021 ENSG00000260698 LOC102724382 lnc-TFB2M-5 SCCPDH CNST
GH01J246689 Promoter/Enhancer 1.1 Ensembl ENCODE 0.4 +7.6 7572 1 GATAD2A CTCF PRDM10 ZHX2 ZNF143 RXRB REST RAD21 TRIM22 ZNF766 ENSG00000235021 SCCPDH LOC102724382 ENSG00000260698 CNST
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260698 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260698 Gene

Genomic Locations for ENSG00000260698 Gene
chr1:246,682,108-246,685,075
(GRCh38/hg38)
Size:
2,968 bases
Orientation:
Plus strand
chr1:246,845,410-246,848,377
(GRCh37/hg19)
Size:
2,968 bases
Orientation:
Plus strand

Genomic View for ENSG00000260698 Gene

Genes around ENSG00000260698 on UCSC Golden Path with GeneCards custom track
ENSG00000260698 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260698 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260698 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260698 Gene

Proteins for ENSG00000260698 Gene

Post-translational modifications for ENSG00000260698 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260698 Gene

Domains & Families for ENSG00000260698 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260698 Gene

Function for ENSG00000260698 Gene

Phenotypes From GWAS Catalog for ENSG00000260698 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260698 Gene

Localization for ENSG00000260698 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260698 Gene

Pathways & Interactions for ENSG00000260698 Gene

PathCards logo

SuperPathways for ENSG00000260698 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260698 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260698 Gene

Drugs & Compounds for ENSG00000260698 Gene

No Compound Related Data Available

Transcripts for ENSG00000260698 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260698 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000293888_9606 lncRNA 2968 3

Ensembl: ENST00000570141 (view in UCSC) ,

LNCipedia: lnc-CNST-1:1,

NONCODE: NONHSAT010716.2,

URS00008B8975_9606 lncRNA 924 3

LncBook: HSALNT0025351,

LNCipedia: lnc-CNST-1:2,

NONCODE: NONHSAT010717.2,

URS00009C3FAE_9606 lncRNA 586 2

LncBook: HSALNT0025354,

NONCODE: NONHSAT150891.1,

ENSG00000260698 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260698 Gene

No ASD Table

Relevant External Links for ENSG00000260698 Gene

GeneLoc Exon Structure for
ENSG00000260698

No data available for mRNA/cDNA for ENSG00000260698 Gene

Expression for ENSG00000260698 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260698 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260698 Gene

This gene is overexpressed in Testis (x12.1).
genes like me logo Genes that share expression patterns with ENSG00000260698: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260698 Gene

Orthologs for ENSG00000260698 Gene

Evolution for ENSG00000260698 Gene

ENSEMBL:
Gene Tree for ENSG00000260698 (if available)
TreeFam:
Gene Tree for ENSG00000260698 (if available)

No data available for Orthologs for ENSG00000260698 Gene

Paralogs for ENSG00000260698 Gene

No data available for Paralogs for ENSG00000260698 Gene

Variants for ENSG00000260698 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260698 Gene

Disorders for ENSG00000260698 Gene

Additional Disease Information for ENSG00000260698

No disorders were found for ENSG00000260698 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260698 Gene

Publications for ENSG00000260698 Gene

No publications were found for ENSG00000260698 Gene.

No data available for Mastermind for ENSG00000260698 Gene

Products for ENSG00000260698 Gene

Sources for ENSG00000260698 Gene