Aliases for ENSG00000260681 Gene

Subcategory (RNA class) for ENSG00000260681 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000260681 Gene

  • Novel Transcript, Antisense To TMC5 5
  • NONHSAG018786.2 91
  • AC130456.4 5
  • Lnc-GDE1-2 165

External Ids for ENSG00000260681 Gene

Summaries for ENSG00000260681 Gene

GeneCards Summary for ENSG00000260681 Gene

ENSG00000260681 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260681 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260681 Gene

Genomics for ENSG00000260681 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260681 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J019409 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.6 563 2.2 ATF7 PRDM10 KDM1A CTCF ZNF692 ZIC2 PATZ1 REST EZH2 ZNF600 TMC5 ENSG00000260681 lnc-TMC5-2 SYT17 ENSG00000259925 KNOP1 GDE1
GH16J019412 Enhancer 1 Ensembl ENCODE dbSUPER 600.7 -1.8 -1792 1.2 KDM1A DPF2 CEBPA CEBPB SMARCA5 ZKSCAN1 TEAD1 BCOR ZNF768 TEAD3 ENSG00000260681 TMC5 SYT17 lnc-TMC5-2 piR-32214-246 GDE1
GH16J019416 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.4 -6.9 -6924 4.2 IKZF1 KDM1A REST FOXJ2 SCRT2 CEBPB MGA SP1 CTCF BRCA1 TMC5 SYT17 ENSG00000259925 ENSG00000260681 lnc-TMC5-2 piR-32214-246 GDE1
GH16J019415 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 -3.7 -3742 1.6 PKNOX1 CEBPA CEBPB TMC5 ENSG00000260681 lnc-TMC5-2 piR-32214-246 GDE1
GH16J019428 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -19.6 -19639 5.4 GATAD2A YBX1 REST FOXA1 GABPA RFX1 ZIC2 ZNF24 SP1 HDAC1 TMC5 RNU4-46P COQ7 ENSG00000259925 CCP110 ENSG00000260681 lnc-TMC5-2 piR-32214-246 GDE1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260681 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260681 Gene

Genomic Locations for ENSG00000260681 Gene
chr16:19,410,729-19,411,662
(GRCh38/hg38)
Size:
934 bases
Orientation:
Minus strand
chr16:19,422,051-19,422,984
(GRCh37/hg19)
Size:
934 bases
Orientation:
Minus strand

Genomic View for ENSG00000260681 Gene

Genes around ENSG00000260681 on UCSC Golden Path with GeneCards custom track
ENSG00000260681 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260681 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260681 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260681 Gene

Proteins for ENSG00000260681 Gene

Post-translational modifications for ENSG00000260681 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260681 Gene

Domains & Families for ENSG00000260681 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260681 Gene

Function for ENSG00000260681 Gene

Phenotypes From GWAS Catalog for ENSG00000260681 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260681 Gene

Localization for ENSG00000260681 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260681 Gene

Pathways & Interactions for ENSG00000260681 Gene

PathCards logo

SuperPathways for ENSG00000260681 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260681 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260681 Gene

Drugs & Compounds for ENSG00000260681 Gene

No Compound Related Data Available

Transcripts for ENSG00000260681 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260681 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000011EB56_9606 lncRNA 665 3

Ensembl: ENST00000568635 (view in UCSC) ,

LNCipedia: lnc-GDE1-2:1,

NONCODE: NONHSAT140887.2,

ENSG00000260681 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260681 Gene

No ASD Table

Relevant External Links for ENSG00000260681 Gene

GeneLoc Exon Structure for
ENSG00000260681

No data available for mRNA/cDNA for ENSG00000260681 Gene

Expression for ENSG00000260681 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260681 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260681 Gene

This gene is overexpressed in Minor Salivary Gland (x16.5), Prostate (x6.0), Colon - Transverse (x5.9), Lung (x4.9), and Cervix - Endocervix (x4.7).
genes like me logo Genes that share expression patterns with ENSG00000260681: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260681 Gene

Orthologs for ENSG00000260681 Gene

Evolution for ENSG00000260681 Gene

ENSEMBL:
Gene Tree for ENSG00000260681 (if available)
TreeFam:
Gene Tree for ENSG00000260681 (if available)

No data available for Orthologs for ENSG00000260681 Gene

Paralogs for ENSG00000260681 Gene

No data available for Paralogs for ENSG00000260681 Gene

Variants for ENSG00000260681 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260681 Gene

Disorders for ENSG00000260681 Gene

Additional Disease Information for ENSG00000260681

No disorders were found for ENSG00000260681 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260681 Gene

Publications for ENSG00000260681 Gene

No publications were found for ENSG00000260681 Gene.

No data available for Mastermind for ENSG00000260681 Gene

Products for ENSG00000260681 Gene

Sources for ENSG00000260681 Gene