Aliases for ENSG00000260677 Gene

Subcategory (RNA class) for ENSG00000260677 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000260677 Gene

  • Novel Transcript 5
  • NONHSAG053000.2 91
  • Lnc-NCBP1-1 165
  • AL445531.1 5

External Ids for ENSG00000260677 Gene

Previous GeneCards Identifiers for ENSG00000260677 Gene

  • GC09P100505

Summaries for ENSG00000260677 Gene

GeneCards Summary for ENSG00000260677 Gene

ENSG00000260677 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260677 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260677 Gene

Genomics for ENSG00000260677 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260677 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J097740 Enhancer 0.7 ENCODE 600.7 -1.8 -1790 1 JUND MTA1 EZH2 ETV6 MGA ZFX UBTF CTBP1 KDM4B ZBTB11 ENSG00000260677 KRT18P13 lnc-FOXE1-2 XPA PTCSC2 FOXE1
GH09J097743 Enhancer 0.6 Ensembl 0.7 +2.1 2093 0.2 REST ZBTB20 KLF4 MIER1 EHMT2 SIN3A ZNF395 ZNF143 KLF10 MIER2 ENSG00000260677 XPA lnc-FOXE1-2 piR-55654-523 FOXE1 PTCSC2
GH09J097757 Enhancer 1 Ensembl ENCODE 0.4 +16.8 16802 4.2 GATAD2A REST TFE3 RCOR2 PRDM1 NR2C1 IRF2 SP1 ZNF24 CEBPA FOXE1 TRMO KRT18P13 TSTD2 ENSG00000260677 piR-55654-523 XPA lnc-FOXE1-2 PTCSC2
GH09J097750 Enhancer 0.6 Ensembl ENCODE 0.4 +8.2 8240 2.8 JUND CTCF GATA3 HNF4A RAD21 FOXE1 TSTD2 ENSG00000260677 piR-55654-523 XPA lnc-FOXE1-2 PTCSC2
GH09J097737 Enhancer 0.6 Ensembl 0.4 -5.6 -5562 0.4 IKZF1 REST ZBTB20 USF2 RAD51 USF1 POLR2A NFYA NFYB TOE1 TSTD2 ZNF782 ZNF322P1 NCBP1 ENSG00000254633 XPA MFSD14C PTMAP11 KRT18P13 ENSG00000260677
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260677 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260677 Gene

Genomic Locations for ENSG00000260677 Gene
chr9:97,743,208-97,744,935
(GRCh38/hg38)
Size:
1,728 bases
Orientation:
Plus strand
chr9:100,505,490-100,507,217
(GRCh37/hg19)
Size:
1,728 bases
Orientation:
Plus strand

Genomic View for ENSG00000260677 Gene

Genes around ENSG00000260677 on UCSC Golden Path with GeneCards custom track
ENSG00000260677 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260677 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260677 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260677 Gene

Proteins for ENSG00000260677 Gene

Post-translational modifications for ENSG00000260677 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260677 Gene

Domains & Families for ENSG00000260677 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260677 Gene

Function for ENSG00000260677 Gene

Phenotypes From GWAS Catalog for ENSG00000260677 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260677 Gene

Localization for ENSG00000260677 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260677 Gene

Pathways & Interactions for ENSG00000260677 Gene

PathCards logo

SuperPathways for ENSG00000260677 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260677 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260677 Gene

Drugs & Compounds for ENSG00000260677 Gene

No Compound Related Data Available

Transcripts for ENSG00000260677 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260677 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003D644A_9606 lncRNA 1728 3

Ensembl: ENST00000562653 (view in UCSC) ,

LNCipedia: lnc-NCBP1-1:1,

NONCODE: NONHSAT133531.2,

URS00008B5E59_9606 lncRNA 1713 2

LNCipedia: lnc-NCBP1-1:2,

NONCODE: NONHSAT133532.2,

ENSG00000260677 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260677 Gene

No ASD Table

Relevant External Links for ENSG00000260677 Gene

GeneLoc Exon Structure for
ENSG00000260677

No data available for mRNA/cDNA for ENSG00000260677 Gene

Expression for ENSG00000260677 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260677 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260677 Gene

This gene is overexpressed in Thyroid (x14.7), Esophagus - Mucosa (x12.4), and Testis (x4.8).
genes like me logo Genes that share expression patterns with ENSG00000260677: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260677 Gene

Orthologs for ENSG00000260677 Gene

Evolution for ENSG00000260677 Gene

ENSEMBL:
Gene Tree for ENSG00000260677 (if available)
TreeFam:
Gene Tree for ENSG00000260677 (if available)

No data available for Orthologs for ENSG00000260677 Gene

Paralogs for ENSG00000260677 Gene

No data available for Paralogs for ENSG00000260677 Gene

Variants for ENSG00000260677 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260677 Gene

Disorders for ENSG00000260677 Gene

Additional Disease Information for ENSG00000260677

No disorders were found for ENSG00000260677 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260677 Gene

Publications for ENSG00000260677 Gene

No publications were found for ENSG00000260677 Gene.

No data available for Mastermind for ENSG00000260677 Gene

Products for ENSG00000260677 Gene

Sources for ENSG00000260677 Gene