Aliases for ENSG00000260664 Gene

Subcategory (RNA class) for ENSG00000260664 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260664 Gene

  • Novel Transcript 5
  • NONHSAG019924.2 91
  • NONHSAG019936.2 91
  • HSALNG0112578 164
  • Lnc-DHX38-3 165
  • AC004158.1 5

External Ids for ENSG00000260664 Gene

Summaries for ENSG00000260664 Gene

GeneCards Summary for ENSG00000260664 Gene

ENSG00000260664 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260664 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260664 Gene

Genomics for ENSG00000260664 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260664 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J072425 Promoter/Enhancer 1.5 UCNEbase FANTOM5 Ensembl dbSUPER 600.7 +2.0 1954 6.2 ATF7 JUN CREB1 JUND NFIC CTCF NFIB ATF2 LCORL ENSG00000260664 MARVELD3 TXNL4B piR-38352-231 LINC01572 LOC107984814 PMFBP1
GH16J072442 Enhancer 0.8 Ensembl 0.4 +16.9 16850 0.8 GATAD2A ATF7 SOX13 RCOR2 RXRB IRF2 PBX2 TOE1 CEBPA KMT2B piR-38352-231 ENSG00000260664 LINC01572 LOC107984814 PMFBP1
GH16J072469 Enhancer 0.8 Ensembl 0.3 +44.1 44055 0.4 GATAD2A SOX13 RCOR2 RXRB IRF2 CEBPA TCF7 FOXA2 EP300 TEAD1 lnc-DHX38-12 lnc-DHX38-11 ENSG00000260664 LOC107984814 LINC01572 PMFBP1
GH16J072473 Enhancer 0.7 Ensembl ENCODE 0.3 +48.9 48946 1.8 POLR2A JUND FOXA2 FOS CTCF FOSL2 SIN3A KDM1A TEAD3 ZNF384 lnc-DHX38-13 lnc-DHX38-12 ENSG00000260664 LOC107984814 LINC01572 PMFBP1
GH16J072481 Enhancer 0.7 Ensembl ENCODE 0.2 +56.4 56355 3 PRDM10 YY1 KLF9 RUNX3 ZNF316 MAFF NR2F1 BATF MAFK SP7 lnc-DHX38-14 lnc-DHX38-15 ENSG00000260664 LINC01572 LOC107984814 PMFBP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260664 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260664 Gene

Genomic Locations for ENSG00000260664 Gene
chr16:72,425,946-72,535,937
(GRCh38/hg38)
Size:
109,992 bases
Orientation:
Plus strand
chr16:72,459,847-72,463,072
(GRCh37/hg19)
Size:
3,226 bases
Orientation:
Plus strand

Genomic View for ENSG00000260664 Gene

Genes around ENSG00000260664 on UCSC Golden Path with GeneCards custom track
ENSG00000260664 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260664 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260664 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260664 Gene

Proteins for ENSG00000260664 Gene

Post-translational modifications for ENSG00000260664 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260664 Gene

Domains & Families for ENSG00000260664 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260664 Gene

Function for ENSG00000260664 Gene

Phenotypes From GWAS Catalog for ENSG00000260664 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260664 Gene

Localization for ENSG00000260664 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260664 Gene

Pathways & Interactions for ENSG00000260664 Gene

PathCards logo

SuperPathways for ENSG00000260664 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260664 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260664 Gene

Drugs & Compounds for ENSG00000260664 Gene

No Compound Related Data Available

Transcripts for ENSG00000260664 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260664 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007CEE5E_9606 lncRNA 4319 3

Ensembl: ENST00000564508 (view in UCSC) ,

LNCipedia: lnc-DHX38-3:6,

NONCODE: NONHSAT173245.1,

URS00007DB3EB_9606 lncRNA 1645 2

Ensembl: ENST00000624327 (view in UCSC) ,

LNCipedia: lnc-DHX38-3:7,

URS00008BB2D9_9606 lncRNA 259 3

LncBook: HSALNT0233286,

LNCipedia: lnc-DHX38-3:3,

NONCODE: NONHSAT143584.2,

URS00008B9405_9606 lncRNA 1642 2

LNCipedia: lnc-DHX38-3:1,

NONCODE: NONHSAT143570.2,

URS00008BDC8B_9606 lncRNA 1150 2

LNCipedia: lnc-DHX38-3:12,

NONCODE: NONHSAT143587.2,

ENSG00000260664 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260664 Gene

No ASD Table

Relevant External Links for ENSG00000260664 Gene

GeneLoc Exon Structure for
ENSG00000260664

No data available for mRNA/cDNA for ENSG00000260664 Gene

Expression for ENSG00000260664 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260664 Gene

Orthologs for ENSG00000260664 Gene

Evolution for ENSG00000260664 Gene

ENSEMBL:
Gene Tree for ENSG00000260664 (if available)
TreeFam:
Gene Tree for ENSG00000260664 (if available)

No data available for Orthologs for ENSG00000260664 Gene

Paralogs for ENSG00000260664 Gene

No data available for Paralogs for ENSG00000260664 Gene

Variants for ENSG00000260664 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260664 Gene

Disorders for ENSG00000260664 Gene

Additional Disease Information for ENSG00000260664

No disorders were found for ENSG00000260664 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260664 Gene

Publications for ENSG00000260664 Gene

No publications were found for ENSG00000260664 Gene.

No data available for Mastermind for ENSG00000260664 Gene

Products for ENSG00000260664 Gene

Sources for ENSG00000260664 Gene