Aliases for ENSG00000260657 Gene

Subcategory (RNA class) for ENSG00000260657 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260657 Gene

  • Novel Transcript 5
  • NONHSAG017261.2 91
  • HSALNG0106796 164
  • AC107871.2 5
  • Lnc-CLN6-1 165

External Ids for ENSG00000260657 Gene

Previous GeneCards Identifiers for ENSG00000260657 Gene

  • GC15M068560

Summaries for ENSG00000260657 Gene

GeneCards Summary for ENSG00000260657 Gene

ENSG00000260657 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260657 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260657 Gene

Genomics for ENSG00000260657 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260657 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J068275 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 631.9 -1.3 -1317 8.6 ZNF221 SP1 HNRNPL CREB1 GATAD2A CTCF ZNF629 PRDM10 REST SIX5 ENSG00000260657 FEM1B SKOR1 IQCH-AS1 PIAS1 CORO2B MAP2K5 NOX5 lnc-CLN6-27 ITGA11
GH15J068290 Enhancer 1 FANTOM5 Ensembl dbSUPER 31.7 -16.1 -16051 6.5 ATF7 PRDM1 ARNT ZSCAN5C ATF2 ZNF189 HIC1 ZNF366 POLR2A FEZF1 ENSG00000260657 ITGA11 lnc-CLN6-27 FEM1B
GH15J068309 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 23.7 -35.1 -35068 7.7 GATAD2A CTCF KDM1A RCOR2 ZIC2 RXRB NR2C1 SP1 SCRT2 MNT ENSG00000260657 FEM1B IQCH-AS1 ITGA11 PIAS1 piR-39222-001 lnc-CLN6-27
GH15J068270 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 21.5 +5.4 5397 4.1 CREB1 PRDM10 ZNF629 IKZF1 ZNF692 TARDBP ZHX2 FOXA1 PRDM1 RFX1 ENSG00000260657 CLN6 FEM1B RF00004-047
GH15J068298 Enhancer 1 ENCODE dbSUPER 24 -21.6 -21624 2.6 GATAD2A RCOR2 RXRB IRF2 IKZF2 SP1 TRIM22 CEBPA SCRT2 SOX13 lnc-CLN6-27 ENSG00000260657 FEM1B PIAS1 ITGA11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260657 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260657 Gene

Genomic Locations for ENSG00000260657 Gene
chr15:68,267,146-68,277,994
(GRCh38/hg38)
Size:
10,849 bases
Orientation:
Minus strand
chr15:68,560,130-68,570,332
(GRCh37/hg19)
Size:
10,203 bases
Orientation:
Minus strand

Genomic View for ENSG00000260657 Gene

Genes around ENSG00000260657 on UCSC Golden Path with GeneCards custom track
ENSG00000260657 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260657 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260657 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260657 Gene

Proteins for ENSG00000260657 Gene

Post-translational modifications for ENSG00000260657 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260657 Gene

Domains & Families for ENSG00000260657 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260657 Gene

Function for ENSG00000260657 Gene

Phenotypes From GWAS Catalog for ENSG00000260657 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260657 Gene

Localization for ENSG00000260657 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260657 Gene

Pathways & Interactions for ENSG00000260657 Gene

PathCards logo

SuperPathways for ENSG00000260657 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260657 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260657 Gene

Drugs & Compounds for ENSG00000260657 Gene

No Compound Related Data Available

Transcripts for ENSG00000260657 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260657 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000077EBA9_9606 lncRNA 502 4

Ensembl: ENST00000612894 (view in UCSC) ,

LncBook: HSALNT0221867,

LNCipedia: lnc-CLN6-1:3,

NONCODE: NONHSAT171722.1,

URS00003BD165_9606 lncRNA 396 3

Ensembl: ENST00000563057 (view in UCSC) ,

LNCipedia: lnc-CLN6-1:1,

NONCODE: NONHSAT046885.2,

URS00008BDA06_9606 lncRNA 4518 2

LNCipedia: lnc-CLN6-1:2,

NONCODE: NONHSAT046886.2,

URS0000D5D19D_9606 lncRNA 1054 2

LncBook: HSALNT0221864,

LNCipedia: lnc-CLN6-1:9,

URS0000D57D67_9606 lncRNA 252 2

LncBook: HSALNT0221868,

LNCipedia: lnc-CLN6-1:7,

ENSG00000260657 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260657 Gene

No ASD Table

Relevant External Links for ENSG00000260657 Gene

GeneLoc Exon Structure for
ENSG00000260657

No data available for mRNA/cDNA for ENSG00000260657 Gene

Expression for ENSG00000260657 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260657 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260657 Gene

This gene is overexpressed in Testis (x5.2).
genes like me logo Genes that share expression patterns with ENSG00000260657: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260657 Gene

Orthologs for ENSG00000260657 Gene

Evolution for ENSG00000260657 Gene

ENSEMBL:
Gene Tree for ENSG00000260657 (if available)
TreeFam:
Gene Tree for ENSG00000260657 (if available)

No data available for Orthologs for ENSG00000260657 Gene

Paralogs for ENSG00000260657 Gene

No data available for Paralogs for ENSG00000260657 Gene

Variants for ENSG00000260657 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260657 Gene

Disorders for ENSG00000260657 Gene

No disorders were found for ENSG00000260657 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260657 Gene

Publications for ENSG00000260657 Gene

No publications were found for ENSG00000260657 Gene.

No data available for Mastermind for ENSG00000260657 Gene

Products for ENSG00000260657 Gene

Sources for ENSG00000260657 Gene