Aliases for ENSG00000260624 Gene

Subcategory (RNA class) for ENSG00000260624 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000260624 Gene

  • Novel Transcript, Antisense To TBC1D21 5
  • HSALNG0107131 167
  • NONHSAG017387 92
  • Lnc-STOML1-3 168
  • AC018943.1 5

External Ids for ENSG00000260624 Gene

Previous GeneCards Identifiers for ENSG00000260624 Gene

  • GC15M074163

Summaries for ENSG00000260624 Gene

GeneCards Summary for ENSG00000260624 Gene

ENSG00000260624 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260624 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260624 Gene

Genomics for ENSG00000260624 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260624 Gene

Promoters and enhancers for ENSG00000260624 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J073873 Promoter 0.5 EPDnew 500.7 -0.1 -51 0.1 CTCF ZNF512 ENSG00000260624 LOC102723657 TBC1D21 lnc-LOXL1-1
GH15J073874 Enhancer 0.5 ENCODE 500.7 -0.6 -555 0.2 CTCF REST RAD21 TRIM22 SMC3 ZNF654 ZNF143 ENSG00000260624 LOC102723657 TBC1D21 LOXL1-AS1 lnc-LOXL1-1
GH15J073872 Enhancer 0.3 Ensembl 500.7 +1.2 1239 0.2 ZNF707 ZNF512 ENSG00000260624 LOC102723657 TBC1D21 EDC3 ENSG00000260103 CLK3 piR-57133-192
GH15J073921 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 -53.1 -53126 10.9 ZNF217 CTCF JUND TEAD4 FOS ZFX ZNF639 ZNF10 ZIC2 POLR2A LOXL1 JA662185 EDC3 LOXL1-AS1 CD276 ENSG00000260624 ISLR FAM219B STOML1
GH15J073870 Enhancer 0.9 Ensembl ENCODE 31.2 +2.2 2239 1 HES1 CTBP1 MYC NR2F2 NFIC CTCF NFE2 FOSL1 FOS BHLHE40 ENSG00000260624 LOC102723657 piR-57133-192
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260624 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260624 Gene

Genomic Locations for ENSG00000260624 Gene
chr15:73,870,949-73,873,540
(GRCh38/hg38)
Size:
2,592 bases
Orientation:
Minus strand
chr15:74,163,291-74,165,707
(GRCh37/hg19)
Size:
2,417 bases
Orientation:
Minus strand

Genomic View for ENSG00000260624 Gene

Genes around ENSG00000260624 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260624 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260624 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260624 Gene

Proteins for ENSG00000260624 Gene

Post-translational modifications for ENSG00000260624 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260624 Gene

Domains & Families for ENSG00000260624 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260624 Gene

Function for ENSG00000260624 Gene

Phenotypes From GWAS Catalog for ENSG00000260624 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260624 Gene

Localization for ENSG00000260624 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260624 Gene

Pathways & Interactions for ENSG00000260624 Gene

PathCards logo

SuperPathways for ENSG00000260624 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260624 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260624 Gene

Drugs & Compounds for ENSG00000260624 Gene

No Compound Related Data Available

Transcripts for ENSG00000260624 Gene

mRNA/cDNA for ENSG00000260624 Gene

8 RNACentral transcripts :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
5 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260624 Gene

No ASD Table

Relevant External Links for ENSG00000260624 Gene

GeneLoc Exon Structure for
ENSG00000260624

Expression for ENSG00000260624 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260624 Gene

This gene is overexpressed in Testis (x52.7).

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260624 Gene

Orthologs for ENSG00000260624 Gene

Evolution for ENSG00000260624 Gene

ENSEMBL:
Gene Tree for ENSG00000260624 (if available)
TreeFam:
Gene Tree for ENSG00000260624 (if available)

No data available for Orthologs for ENSG00000260624 Gene

Paralogs for ENSG00000260624 Gene

No data available for Paralogs for ENSG00000260624 Gene

Variants for ENSG00000260624 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260624 Gene

Disorders for ENSG00000260624 Gene

No disorders were found for ENSG00000260624 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260624 Gene

Publications for ENSG00000260624 Gene

No publications were found for ENSG00000260624 Gene.

No data available for Mastermind for ENSG00000260624 Gene

Products for ENSG00000260624 Gene

Sources for ENSG00000260624 Gene