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Aliases for ENSG00000260597 Gene

Subcategory (RNA class) for ENSG00000260597 Gene

lncRNA

Quality Score for this RNA gene is

6.2

Aliases for ENSG00000260597 Gene

  • AC012531.1 5

External Ids for ENSG00000260597 Gene

ORGUL Members for ENSG00000260597 Gene

Previous GeneCards Identifiers for ENSG00000260597 Gene

  • GC12P054413

Summaries for ENSG00000260597 Gene

GeneCards Summary for ENSG00000260597 Gene

ENSG00000260597 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ENSG00000260597 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for ENSG00000260597

Additional gene information for ENSG00000260597 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000260597 Gene

Genomics for ENSG00000260597 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260597 Gene

Promoters and enhancers for ENSG00000260597 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I054009 Promoter/Enhancer 3.2 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 +2.2 2186 25.8 HDGF PKNOX1 SMAD1 ARNT SIN3A FEZF1 ZNF2 POLR2B CBX5 ZNF213 HOXC4 HOXC6 HOXC5 GC12P054071 GC12P054093 PIR46464 PIR59985 PIR53546 PIR59725 AAAS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000260597 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260597 Gene

Genomic Locations for ENSG00000260597 Gene
chr12:54,019,910-54,022,589
(GRCh38/hg38)
Size:
2,680 bases
Orientation:
Plus strand
chr12:54,413,694-54,416,373
(GRCh37/hg19)

Genomic View for ENSG00000260597 Gene

Genes around ENSG00000260597 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260597 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260597 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000260597 Gene

ORGUL Member Location for ENSG00000260597 gene

No data available for RefSeq DNA sequence for ENSG00000260597 Gene

Proteins for ENSG00000260597 Gene

Post-translational modifications for ENSG00000260597 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260597 Gene

Domains & Families for ENSG00000260597 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000260597 Gene

Function for ENSG00000260597 Gene

Phenotypes From GWAS Catalog for ENSG00000260597 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260597 Gene

Localization for ENSG00000260597 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260597 Gene

Pathways & Interactions for ENSG00000260597 Gene

SuperPathways for ENSG00000260597 Gene

No Data Available

Interacting Proteins for ENSG00000260597 Gene

Gene Ontology (GO) - Biological Process for ENSG00000260597 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000260597 Gene

Drugs & Compounds for ENSG00000260597 Gene

No Compound Related Data Available

Transcripts for ENSG00000260597 Gene

fRNAdb Secondary structures for ENSG00000260597 Gene

  • FR026430

mRNA/cDNA for ENSG00000260597 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260597 Gene

No ASD Table

Relevant External Links for ENSG00000260597 Gene

GeneLoc Exon Structure for
ENSG00000260597

Expression for ENSG00000260597 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000260597 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260597 Gene

This gene is overexpressed in Ovary (x5.5) and Nerve - Tibial (x4.6).
genes like me logo Genes that share expression patterns with ENSG00000260597: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260597 Gene

Orthologs for ENSG00000260597 Gene

Evolution for ENSG00000260597 Gene

ENSEMBL:
Gene Tree for ENSG00000260597 (if available)
TreeFam:
Gene Tree for ENSG00000260597 (if available)

No data available for Orthologs for ENSG00000260597 Gene

Paralogs for ENSG00000260597 Gene

No data available for Paralogs for ENSG00000260597 Gene

Variants for ENSG00000260597 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260597 Gene

Disorders for ENSG00000260597 Gene

No disorders were found for ENSG00000260597 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260597 Gene

Publications for ENSG00000260597 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for ENSG00000260597 Gene

Sources for ENSG00000260597 Gene

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