Aliases for ENSG00000260593 Gene

Subcategory (RNA class) for ENSG00000260593 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000260593 Gene

  • Novel Transcript, Antisense To MARVELD3 5
  • NONHSAG019895 92
  • HSALNG0112497 167
  • Lnc-PHLPP2-1 168
  • AC009097.2 5

External Ids for ENSG00000260593 Gene

Previous GeneCards Identifiers for ENSG00000260593 Gene

  • GC16M071657

Summaries for ENSG00000260593 Gene

GeneCards Summary for ENSG00000260593 Gene

ENSG00000260593 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260593 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260593 Gene

Genomics for ENSG00000260593 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260593 Gene

Promoters and enhancers for ENSG00000260593 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J071625 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 500.7 -0.6 -640 3.7 CTCF NRF1 ZIC2 POLR2A CLOCK ZBTB26 ZBTB25 CHD1 ZBTB7A EZH2 MARVELD3 ENSG00000260593 lnc-MARVELD3-5 PHLPP2 RNU6-208P TAT SNORA70D HPR RF00017-2137
GH16J071387 Enhancer 0.7 Ensembl ENCODE 4.1 +240.0 240015 2.8 USF1 POLR2A HDAC2 NANOG TCF12 ZNF384 EP300 TEAD4 SP1 ZNF148 CALB2 ZNF19 HPR ENSG00000260593 CHST4 LOC105371332 LINC02136
GH16J071401 Enhancer 0.2 Ensembl 4.4 +224.6 224615 0.8 ZNF23 HPR ENSG00000260593 LOC105371332 ENSG00000262120 lnc-CALB2-5 LINC02136
GH16J072225 Enhancer 0.2 Ensembl 4.3 -598.4 -598385 0.4 ENSG00000261673 PMFBP1 ENSG00000260593 lnc-PMFBP1-5
GH16J071623 Enhancer 0.9 Ensembl ENCODE 0.7 +3.0 3015 0.4 FOXA2 SAP130 MEF2B FOXP1 SMAD4 EBF1 RXRA RARA NR2F6 HMG20A PHLPP2 ENSG00000260593 LOC105371334 MARVELD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260593 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260593 Gene

Genomic Locations for ENSG00000260593 Gene
chr16:71,623,708-71,626,816
(GRCh38/hg38)
Size:
3,109 bases
Orientation:
Minus strand
chr16:71,657,611-71,660,719
(GRCh37/hg19)
Size:
3,109 bases
Orientation:
Minus strand

Genomic View for ENSG00000260593 Gene

Genes around ENSG00000260593 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260593 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260593 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260593 Gene

Proteins for ENSG00000260593 Gene

Post-translational modifications for ENSG00000260593 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260593 Gene

Domains & Families for ENSG00000260593 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260593 Gene

Function for ENSG00000260593 Gene

Phenotypes From GWAS Catalog for ENSG00000260593 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260593 Gene

Localization for ENSG00000260593 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260593 Gene

Pathways & Interactions for ENSG00000260593 Gene

PathCards logo

SuperPathways for ENSG00000260593 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260593 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260593 Gene

Drugs & Compounds for ENSG00000260593 Gene

No Compound Related Data Available

Transcripts for ENSG00000260593 Gene

mRNA/cDNA for ENSG00000260593 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260593 Gene

No ASD Table

Relevant External Links for ENSG00000260593 Gene

GeneLoc Exon Structure for
ENSG00000260593

Expression for ENSG00000260593 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260593 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260593 Gene

This gene is overexpressed in Colon - Transverse (x8.7), Small Intestine - Terminal Ileum (x6.9), and Kidney - Cortex (x5.5).
genes like me logo Genes that share expression patterns with ENSG00000260593: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260593 Gene

Orthologs for ENSG00000260593 Gene

Evolution for ENSG00000260593 Gene

ENSEMBL:
Gene Tree for ENSG00000260593 (if available)
TreeFam:
Gene Tree for ENSG00000260593 (if available)

No data available for Orthologs for ENSG00000260593 Gene

Paralogs for ENSG00000260593 Gene

No data available for Paralogs for ENSG00000260593 Gene

Variants for ENSG00000260593 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260593 Gene

Disorders for ENSG00000260593 Gene

No disorders were found for ENSG00000260593 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260593 Gene

Publications for ENSG00000260593 Gene

No publications were found for ENSG00000260593 Gene.

No data available for Mastermind for ENSG00000260593 Gene

Products for ENSG00000260593 Gene

Sources for ENSG00000260593 Gene