Aliases for ENSG00000260592 Gene

Subcategory (RNA class) for ENSG00000260592 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000260592 Gene

  • Novel Transcript, Antisense To TMC5 5
  • NONHSAG018787.2 91
  • AC130456.3 5
  • Lnc-GDE1-1 165

External Ids for ENSG00000260592 Gene

Previous GeneCards Identifiers for ENSG00000260592 Gene

  • GC16M019488

Summaries for ENSG00000260592 Gene

GeneCards Summary for ENSG00000260592 Gene

ENSG00000260592 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260592 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260592 Gene

Genomics for ENSG00000260592 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260592 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J019485 Enhancer 1.1 Ensembl ENCODE 600.7 -0.1 -100 4.4 HNRNPL TEAD4 LEF1 IKZF1 JUND DDX20 MTA2 PHF21A PKNOX1 MTA1 ENSG00000260592 RPS15A SYT17 COQ7 KNOP1 CCP110 TMC5 ENSG00000261195 GDE1 L13714-169
GH16J019479 Enhancer 0.9 Ensembl ENCODE 0.4 +8.3 8300 0.4 GATAD2A TFE3 SOX13 RCOR2 ZNF7 FOXA1 RXRB CEBPA TCF7 TEAD1 SYT17 ENSG00000260592 RF00017-2000 GDE1 TMC5
GH16J019493 Enhancer 0.7 ENCODE 0.4 -5.9 -5943 0.1 IKZF2 TRIM22 EED DPF2 HMBOX1 RELB RUNX3 AFF1 MIER1 ARNT L13714-169 ENSG00000260592 GDE1 TMC5
GH16J019480 Enhancer 0.6 Ensembl 0.4 +7.5 7500 0.8 RXRB ZNF24 ESRRA FOSL2 SMAD4 ATF3 RARA THRB FOS NR2F6 SYT17 KNOP1 ENSG00000260592 RF00017-2000 GDE1 TMC5
GH16J019481 Enhancer 0.6 Ensembl 0.4 +6.3 6300 0.8 NFE2 ZNF316 MAFF MAFK MAFG ZNF592 ZFP91 RXRA NFE2L2 BACH1 SYT17 ENSG00000260592 RF00017-2000 GDE1 TMC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260592 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260592 Gene

Genomic Locations for ENSG00000260592 Gene
chr16:19,459,961-19,487,901
(GRCh38/hg38)
Size:
27,941 bases
Orientation:
Minus strand
chr16:19,488,238-19,499,221
(GRCh37/hg19)
Size:
10,984 bases
Orientation:
Minus strand

Genomic View for ENSG00000260592 Gene

Genes around ENSG00000260592 on UCSC Golden Path with GeneCards custom track
ENSG00000260592 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260592 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260592 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260592 Gene

Proteins for ENSG00000260592 Gene

Post-translational modifications for ENSG00000260592 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260592 Gene

Domains & Families for ENSG00000260592 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260592 Gene

Function for ENSG00000260592 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260592 Gene

Localization for ENSG00000260592 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260592 Gene

Pathways & Interactions for ENSG00000260592 Gene

PathCards logo

SuperPathways for ENSG00000260592 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260592 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260592 Gene

Drugs & Compounds for ENSG00000260592 Gene

No Compound Related Data Available

Transcripts for ENSG00000260592 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260592 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001AF6BD_9606 lncRNA 633 3

Ensembl: ENST00000561762 (view in UCSC) ,

LNCipedia: lnc-GDE1-1:1,

NONCODE: NONHSAT140888.2,

URS0000D5D56F_9606 lncRNA 1204 1

LNCipedia: lnc-GDE1-1:5,

URS0000D5E363_9606 lncRNA 699 1

LNCipedia: lnc-GDE1-1:4,

URS0000D57C12_9606 lncRNA 635 1

LNCipedia: lnc-GDE1-1:6,

ENSG00000260592 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260592 Gene

No ASD Table

Relevant External Links for ENSG00000260592 Gene

GeneLoc Exon Structure for
ENSG00000260592

No data available for mRNA/cDNA for ENSG00000260592 Gene

Expression for ENSG00000260592 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260592 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260592 Gene

This gene is overexpressed in Whole Blood (x27.6), Minor Salivary Gland (x5.2), and Small Intestine - Terminal Ileum (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000260592: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260592 Gene

Orthologs for ENSG00000260592 Gene

Evolution for ENSG00000260592 Gene

ENSEMBL:
Gene Tree for ENSG00000260592 (if available)
TreeFam:
Gene Tree for ENSG00000260592 (if available)

No data available for Orthologs for ENSG00000260592 Gene

Paralogs for ENSG00000260592 Gene

No data available for Paralogs for ENSG00000260592 Gene

Variants for ENSG00000260592 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260592 Gene

Disorders for ENSG00000260592 Gene

Additional Disease Information for ENSG00000260592

No disorders were found for ENSG00000260592 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260592 Gene

Publications for ENSG00000260592 Gene

No publications were found for ENSG00000260592 Gene.

No data available for Mastermind for ENSG00000260592 Gene

Products for ENSG00000260592 Gene

Sources for ENSG00000260592 Gene