Aliases for ENSG00000260586 Gene

Subcategory (RNA class) for ENSG00000260586 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260586 Gene

  • Novel Transcript, Intronic To THSD4 5
  • NONHSAG017325.2 91
  • HSALNG0107001 164
  • Lnc-LRRC49-2 165
  • AC064799.2 5

External Ids for ENSG00000260586 Gene

Previous GeneCards Identifiers for ENSG00000260586 Gene

  • GC15P071634
  • GC15P071342
  • GC15P071426
  • GC15P071644
  • GC15P071861

Summaries for ENSG00000260586 Gene

GeneCards Summary for ENSG00000260586 Gene

ENSG00000260586 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260586 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260586 Gene

Genomics for ENSG00000260586 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260586 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J071328 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 +1.5 1487 11.2 YBX1 REST RFX1 TARDBP ZHX2 FOXA1 ZIC2 SP1 ZBTB44 HES1 ENSG00000260586 piR-58997 PARP6 THSD4 piR-33614-090 NR2E3
GH15J071349 Enhancer 0.9 Ensembl ENCODE 0.4 +17.5 17543 2.9 PRDM10 ZNF629 KDM1A ZNF692 FOXA1 ZNF37A ZNF561 ZNF792 ZBTB44 ZNF10 PARP6 RPL17P39 ENSG00000260586 piR-59297-224 THSD4 NR2E3
GH15J071312 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -18.0 -17970 3.1 SP1 EZH2 YY1 MYNN JUND NR2F2 RAD21 HNF4A RXRA MAX piR-38051-108 THSD4 SENP8 ENSG00000260586 NR2E3
GH15J071325 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 -6.5 -6491 1.7 HNF4A ENSG00000260586 piR-38051-108 THSD4 NR2E3
GH15J071323 Enhancer 0.5 FANTOM5 dbSUPER 0.4 -8.5 -8472 0.4 NFE2L2 ENSG00000260586 piR-38051-108 THSD4 NR2E3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260586 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260586 Gene

Genomic Locations for ENSG00000260586 Gene
chr15:71,332,120-71,352,460
(GRCh38/hg38)
Size:
20,341 bases
Orientation:
Plus strand
chr15:71,634,663-71,640,810
(GRCh37/hg19)
Size:
6,148 bases
Orientation:
Plus strand

Genomic View for ENSG00000260586 Gene

Genes around ENSG00000260586 on UCSC Golden Path with GeneCards custom track
ENSG00000260586 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260586 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260586 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260586 Gene

Proteins for ENSG00000260586 Gene

Post-translational modifications for ENSG00000260586 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260586 Gene

Domains & Families for ENSG00000260586 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260586 Gene

Function for ENSG00000260586 Gene

Phenotypes From GWAS Catalog for ENSG00000260586 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260586 Gene

Localization for ENSG00000260586 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260586 Gene

Pathways & Interactions for ENSG00000260586 Gene

PathCards logo

SuperPathways for ENSG00000260586 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260586 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260586 Gene

Drugs & Compounds for ENSG00000260586 Gene

No Compound Related Data Available

Transcripts for ENSG00000260586 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260586 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000A586F_9606 lncRNA 698 4

Ensembl: ENST00000562681 (view in UCSC) ,

LncBook: HSALNT0222352,

LNCipedia: lnc-LRRC49-2:1,

NONCODE: NONHSAT047042.2,

URS0000DB9DAD_9606 lncRNA 859 1

Ensembl: ENST00000648513 (view in UCSC) ,

ENSG00000260586 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260586 Gene

No ASD Table

Relevant External Links for ENSG00000260586 Gene

GeneLoc Exon Structure for
ENSG00000260586

No data available for mRNA/cDNA for ENSG00000260586 Gene

Expression for ENSG00000260586 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260586 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260586 Gene

This gene is overexpressed in Testis (x10.5), Small Intestine - Terminal Ileum (x5.4), Cervix - Ectocervix (x5.4), and Breast - Mammary Tissue (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000260586: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260586 Gene

Orthologs for ENSG00000260586 Gene

Evolution for ENSG00000260586 Gene

ENSEMBL:
Gene Tree for ENSG00000260586 (if available)
TreeFam:
Gene Tree for ENSG00000260586 (if available)

No data available for Orthologs for ENSG00000260586 Gene

Paralogs for ENSG00000260586 Gene

No data available for Paralogs for ENSG00000260586 Gene

Variants for ENSG00000260586 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260586 Gene

Disorders for ENSG00000260586 Gene

Additional Disease Information for ENSG00000260586

No disorders were found for ENSG00000260586 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260586 Gene

Publications for ENSG00000260586 Gene

No publications were found for ENSG00000260586 Gene.

No data available for Mastermind for ENSG00000260586 Gene

Products for ENSG00000260586 Gene

Sources for ENSG00000260586 Gene