Aliases for ENSG00000260577 Gene

Subcategory (RNA class) for ENSG00000260577 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000260577 Gene

  • Novel Transcript, Antisense To CDH3 5
  • NONHSAG019808.2 91
  • Lnc-SMPD3-2 165
  • AC126773.4 5

External Ids for ENSG00000260577 Gene

Previous GeneCards Identifiers for ENSG00000260577 Gene

  • GC16M068680

Summaries for ENSG00000260577 Gene

GeneCards Summary for ENSG00000260577 Gene

ENSG00000260577 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260577 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260577 Gene

Genomics for ENSG00000260577 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260577 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J068642 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.7 657 6.9 CEBPG ATF7 TEAD4 PRDM10 KDM1A ZIC2 PATZ1 POLR2A EZH2 ZFX CDH3 ENSG00000260577 ZFP90 lnc-CDH3-5 RF00017-2113 CDH1
GH16J068635 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +9.6 9582 2 FOXA1 SCRT2 SMARCC1 SMARCC2 RFX5 PRDM1 STAT1 JUND ZMYM3 CDH3 lnc-CDH3-5 ZFP90 TMED6 ENSG00000260577 RF00017-2113 CDH1
GH16J068640 Enhancer 0.4 ENCODE dbSUPER 0.7 +5.0 4968 1.1 JUND ZFP90 ENSG00000260577 CDH3 lnc-CDH3-5 RF00017-2113 CDH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260577 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260577 Gene

Genomic Locations for ENSG00000260577 Gene
chr16:68,644,248-68,646,183
(GRCh38/hg38)
Size:
1,936 bases
Orientation:
Minus strand
chr16:68,679,283-68,680,071
(GRCh37/hg19)
Size:
789 bases
Orientation:
Minus strand

Genomic View for ENSG00000260577 Gene

Genes around ENSG00000260577 on UCSC Golden Path with GeneCards custom track
ENSG00000260577 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260577 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260577 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260577 Gene

Proteins for ENSG00000260577 Gene

Post-translational modifications for ENSG00000260577 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260577 Gene

Domains & Families for ENSG00000260577 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260577 Gene

Function for ENSG00000260577 Gene

Phenotypes From GWAS Catalog for ENSG00000260577 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260577 Gene

Localization for ENSG00000260577 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260577 Gene

Pathways & Interactions for ENSG00000260577 Gene

PathCards logo

SuperPathways for ENSG00000260577 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260577 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260577 Gene

Drugs & Compounds for ENSG00000260577 Gene

No Compound Related Data Available

Transcripts for ENSG00000260577 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260577 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007658A5_9606 lncRNA 1682 2

Ensembl: ENST00000562172 (view in UCSC) ,

LNCipedia: lnc-SMPD3-2:3,

URS00008BBAF1_9606 lncRNA 954 2

LNCipedia: lnc-SMPD3-2:2,

NONCODE: NONHSAT143299.2,

URS0000D58BEB_9606 lncRNA 977 1

LNCipedia: lnc-SMPD3-2:4,

URS0000D5BA5C_9606 lncRNA 738 1

LNCipedia: lnc-SMPD3-2:6,

URS0000D5A436_9606 lncRNA 565 1

LNCipedia: lnc-SMPD3-2:5,

ENSG00000260577 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260577 Gene

No ASD Table

Relevant External Links for ENSG00000260577 Gene

GeneLoc Exon Structure for
ENSG00000260577

No data available for mRNA/cDNA for ENSG00000260577 Gene

Expression for ENSG00000260577 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260577 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260577 Gene

This gene is overexpressed in Ovary (x14.6), Fallopian Tube (x5.7), and Uterus (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000260577: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260577 Gene

Orthologs for ENSG00000260577 Gene

Evolution for ENSG00000260577 Gene

ENSEMBL:
Gene Tree for ENSG00000260577 (if available)
TreeFam:
Gene Tree for ENSG00000260577 (if available)

No data available for Orthologs for ENSG00000260577 Gene

Paralogs for ENSG00000260577 Gene

No data available for Paralogs for ENSG00000260577 Gene

Variants for ENSG00000260577 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260577 Gene

Disorders for ENSG00000260577 Gene

Additional Disease Information for ENSG00000260577

No disorders were found for ENSG00000260577 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260577 Gene

Publications for ENSG00000260577 Gene

No publications were found for ENSG00000260577 Gene.

No data available for Mastermind for ENSG00000260577 Gene

Products for ENSG00000260577 Gene

Sources for ENSG00000260577 Gene