Aliases for ENSG00000260569 Gene

Subcategory (RNA class) for ENSG00000260569 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260569 Gene

  • Novel Transcript 5
  • NONHSAG024162.2 91
  • HSALNG0122425 164
  • Lnc-CYB5A-1 165
  • AC090398.1 5

External Ids for ENSG00000260569 Gene

Previous GeneCards Identifiers for ENSG00000260569 Gene

  • GC18M071878

Summaries for ENSG00000260569 Gene

GeneCards Summary for ENSG00000260569 Gene

ENSG00000260569 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260569 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260569 Gene

Genomics for ENSG00000260569 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260569 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J074240 Enhancer 0.4 Ensembl 600.7 -0.1 -146 0.6 YY1 RXRA SP1 ENSG00000260569 CYB5A lnc-FBXO15-6 TIMM21
GH18J074242 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.0 -2046 2 LEF1 IKZF1 JUND MTA2 PKNOX1 MTA1 REST IRF2 SP1 BRD9 CYB5A ENSG00000260569 lnc-FBXO15-6 TIMM21
GH18J074248 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -10.1 -10068 4 GATAD2A TFE3 LEF1 IKZF1 RCOR2 ZNF7 JUND PKNOX1 RXRB NR2C1 CYB5A C18orf63 CNDP2 ENSG00000260569 lnc-FBXO15-6 TIMM21
GH18J074289 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 -50.8 -50829 3.4 SP1 HNRNPL CREB1 GATAD2A PRDM10 REST TFE3 NFKBIZ KDM1A RCOR2 CYB5A ENSG00000286529 lnc-FBXO15-6 ZNF407 C18orf63 lnc-CYB5A-2 ENSG00000260569 TIMM21
GH18J074232 Enhancer 1.1 ENCODE dbSUPER 0.4 +5.9 5939 4.2 GATAD2A REST TFE3 SOX13 NFKBIZ RCOR2 FOXA1 RXRB IRF2 SP1 CYB5A C18orf63 ENSG00000260569 RF00017-2705 RN7SL551P lnc-TIMM21-6 TIMM21
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260569 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260569 Gene

Genomic Locations for ENSG00000260569 Gene
chr18:74,211,386-74,240,555
(GRCh38/hg38)
Size:
29,170 bases
Orientation:
Minus strand
chr18:71,878,626-71,907,790
(GRCh37/hg19)
Size:
29,165 bases
Orientation:
Minus strand

Genomic View for ENSG00000260569 Gene

Genes around ENSG00000260569 on UCSC Golden Path with GeneCards custom track
ENSG00000260569 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260569 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260569 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260569 Gene

Proteins for ENSG00000260569 Gene

Post-translational modifications for ENSG00000260569 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260569 Gene

Domains & Families for ENSG00000260569 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260569 Gene

Function for ENSG00000260569 Gene

Phenotypes From GWAS Catalog for ENSG00000260569 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260569 Gene

Localization for ENSG00000260569 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260569 Gene

Pathways & Interactions for ENSG00000260569 Gene

PathCards logo

SuperPathways for ENSG00000260569 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260569 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260569 Gene

Drugs & Compounds for ENSG00000260569 Gene

No Compound Related Data Available

Transcripts for ENSG00000260569 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260569 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001C9AA2_9606 lncRNA 457 4

Ensembl: ENST00000580403 (view in UCSC) ,

LncBook: HSALNT0253062,

LNCipedia: lnc-CYB5A-1:1,

NONCODE: NONHSAT059864.2,

URS0000593220_9606 lncRNA 1179 2

Ensembl: ENST00000562795 (view in UCSC) ,

LNCipedia: lnc-CYB5A-1:2,

URS00008B5943_9606 lncRNA 1184 2

LNCipedia: lnc-CYB5A-1:3,

NONCODE: NONHSAT059863.2,

ENSG00000260569 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260569 Gene

No ASD Table

Relevant External Links for ENSG00000260569 Gene

GeneLoc Exon Structure for
ENSG00000260569

No data available for mRNA/cDNA for ENSG00000260569 Gene

Expression for ENSG00000260569 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260569 Gene

genes like me logo Genes that share expression patterns with ENSG00000260569: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260569 Gene

Orthologs for ENSG00000260569 Gene

Evolution for ENSG00000260569 Gene

ENSEMBL:
Gene Tree for ENSG00000260569 (if available)
TreeFam:
Gene Tree for ENSG00000260569 (if available)

No data available for Orthologs for ENSG00000260569 Gene

Paralogs for ENSG00000260569 Gene

No data available for Paralogs for ENSG00000260569 Gene

Variants for ENSG00000260569 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260569 Gene

Disorders for ENSG00000260569 Gene

No disorders were found for ENSG00000260569 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260569 Gene

Publications for ENSG00000260569 Gene

No publications were found for ENSG00000260569 Gene.

No data available for Mastermind for ENSG00000260569 Gene

Products for ENSG00000260569 Gene

Sources for ENSG00000260569 Gene