Aliases for ENSG00000260537 Gene

Aliases for ENSG00000260537 Gene

  • Novel Protein, DDX19B And DDX19A Readthrough 5
  • ATP-Dependent RNA Helicase DDX19B 13
  • HCG2043426, Isoform CRA_b 13
  • Uncharacterized Protein 13
  • AC012184.2 5

External Ids for ENSG00000260537 Gene

Previous GeneCards Identifiers for ENSG00000260537 Gene

  • GC16P070334
  • GC16P070300
  • GC16P070355
  • GC16P070368
  • GC16P070379
  • GC16P070301
  • GC16P070302
  • GC16P070326
  • GC16P070342

Summaries for ENSG00000260537 Gene

GeneCards Summary for ENSG00000260537 Gene

ENSG00000260537 is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is DDX19A.

Additional gene information for ENSG00000260537 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260537 Gene

Genomics for ENSG00000260537 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260537 Gene

Promoters and enhancers for ENSG00000260537 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J070298 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.3 307 2.2 FOXK2 ZBTB40 ZNF217 EP300 ZSCAN5C POLR2G NCOR1 PHF8 POLR2A KDM6A ENSG00000260537 DDX19B COG4 ENSG00000261777 PDXDC2P NPIPB14P piR-42248
GH16J070346 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +47.8 47759 3.1 ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 POLR2G SP1 BCLAF1 GTF2E2 ENSG00000261777 DDX19A LOC100506083 EXOSC6 ENSG00000285710 ENSG00000260537
GH16J070301 Promoter 0.7 Ensembl 0.7 +2.2 2207 1.2 TRIM28 ZFP91 CBX5 TRIM24 ZNF577 CBX3 PRDM1 RELB ERF SMG1P7 COG4 EXOSC6 ENSG00000260537 DDX19B piR-42248
GH16J070306 Enhancer 0.3 Ensembl 0.4 +7.1 7107 0.2 FOXP1 MLLT1 ENSG00000260537 piR-42248 DDX19B
GH16J070323 Enhancer 0.3 Ensembl 0.4 +24.8 24807 0.4 NFE2 ZNF770 piR-42248 ENSG00000260537 ENSG00000261777 LOC100506083 DDX19B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260537 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260537 Gene

Genomic Locations for ENSG00000260537 Gene
chr16:70,299,194-70,372,582
(GRCh38/hg38)
Size:
73,389 bases
Orientation:
Plus strand
chr16:70,333,097-70,400,163
(GRCh37/hg19)
Size:
67,067 bases
Orientation:
Plus strand

Genomic View for ENSG00000260537 Gene

Genes around ENSG00000260537 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260537 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260537 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260537 Gene

Proteins for ENSG00000260537 Gene

  • Protein details for ENSG00000260537 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H3BPV3-H3BPV3_HUMAN
    Recommended name:
    ATP-dependent RNA helicase DDX19B
    Protein Accession:
    H3BPV3

    Protein attributes for ENSG00000260537 Gene

    Size:
    30 amino acids
    Molecular mass:
    3214 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ENSG00000260537 Gene

Post-translational modifications for ENSG00000260537 Gene

No Post-translational modifications

Other Protein References for ENSG00000260537 Gene

No data available for DME Specific Peptides for ENSG00000260537 Gene

Domains & Families for ENSG00000260537 Gene

Gene Families for ENSG00000260537 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ENSG00000260537 Gene

genes like me logo Genes that share domains with ENSG00000260537: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260537 Gene

Function for ENSG00000260537 Gene

Phenotypes From GWAS Catalog for ENSG00000260537 Gene

Gene Ontology (GO) - Molecular Function for ENSG00000260537 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with ENSG00000260537: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260537 Gene

Localization for ENSG00000260537 Gene

Subcellular locations from the

Human Protein Atlas (HPA)

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ENSG00000260537 Gene

Pathways & Interactions for ENSG00000260537 Gene

PathCards logo

SuperPathways for ENSG00000260537 Gene

No Data Available

Interacting Proteins for ENSG00000260537 Gene

STRING Interaction Network Preview (showing top 5 STRING interactants - click image to see top 25)
STRING Interaction Network
Selected Interacting proteins: ENSP00000454699 for ENSG00000260537 Gene via STRING

;

Gene Ontology (GO) - Biological Process for ENSG00000260537 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000260537 Gene

Drugs & Compounds for ENSG00000260537 Gene

No Compound Related Data Available

Transcripts for ENSG00000260537 Gene

mRNA/cDNA for ENSG00000260537 Gene

3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260537 Gene

No ASD Table

Relevant External Links for ENSG00000260537 Gene

GeneLoc Exon Structure for
ENSG00000260537

Expression for ENSG00000260537 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260537 Gene

Orthologs for ENSG00000260537 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ENSG00000260537 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia -- 31
  • 51 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 31
  • 48 (a)
ManyToMany
chicken
(Gallus gallus)
Aves DDX19B 31
  • 51 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ddx19 31
  • 45 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Dbp80 31
  • 29 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ddx-19 31
  • 12 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes DBP5 31
  • 22 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8406 31
  • 31 (a)
OneToMany
Species where no ortholog for ENSG00000260537 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ENSG00000260537 Gene

ENSEMBL:
Gene Tree for ENSG00000260537 (if available)
TreeFam:
Gene Tree for ENSG00000260537 (if available)

Paralogs for ENSG00000260537 Gene

Pseudogenes.org Pseudogenes for ENSG00000260537 Gene

genes like me logo Genes that share paralogs with ENSG00000260537: view

Variants for ENSG00000260537 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260537 Gene

Disorders for ENSG00000260537 Gene

No disorders were found for ENSG00000260537 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260537 Gene

Publications for ENSG00000260537 Gene

  1. Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation features. (PMID: 22223895) Bienvenut WV … Giglione C (Molecular & cellular proteomics : MCP 2012) 13 54
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 13 54
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 13 54

No data available for Mastermind for ENSG00000260537 Gene

Products for ENSG00000260537 Gene

Sources for ENSG00000260537 Gene