Aliases for ENSG00000260526 Gene

Subcategory (RNA class) for ENSG00000260526 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000260526 Gene

  • Novel Transcript, Antisense To AP1AR 5
  • NONHSAG038649.2 91
  • AC109347.1 5
  • Lnc-TIFA-1 165

External Ids for ENSG00000260526 Gene

Previous GeneCards Identifiers for ENSG00000260526 Gene

  • GC04M113150

Summaries for ENSG00000260526 Gene

GeneCards Summary for ENSG00000260526 Gene

ENSG00000260526 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260526 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260526 Gene

Genomics for ENSG00000260526 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260526 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J112230 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.4 -351 3.9 CEBPG SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 REST TFE3 AP1AR ENSG00000260526 TIFA MIR302CHG ZGRF1 LARP7 ENSG00000272567 ALPK1
GH04J113114 Enhancer 0.4 Ensembl 9.7 -883.5 -883505 0.2 PRDM10 ZNF585B POLR2A ENSG00000260526 MIR1243 MIR8082 ANK2 CAMK2D
GH04J112214 Enhancer 0.8 Ensembl ENCODE 0.4 +17.7 17695 2.6 CTCF REST RAD21 TRIM22 CEBPB ASH2L JUN FOS SMC3 JUND FAM241A TIFA piR-42613-065 ENSG00000260526 AP1AR
GH04J112224 Enhancer 0.2 dbSUPER 0.4 +7.3 7292 0.4 FAM241A AP1AR ENSG00000260526 piR-42613-065
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260526 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260526 Gene

Genomic Locations for ENSG00000260526 Gene
chr4:112,229,561-112,231,596
(GRCh38/hg38)
Size:
2,036 bases
Orientation:
Minus strand
chr4:113,150,717-113,152,752
(GRCh37/hg19)
Size:
2,036 bases
Orientation:
Minus strand

Genomic View for ENSG00000260526 Gene

Genes around ENSG00000260526 on UCSC Golden Path with GeneCards custom track
ENSG00000260526 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260526 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260526 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260526 Gene

Proteins for ENSG00000260526 Gene

Post-translational modifications for ENSG00000260526 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260526 Gene

Domains & Families for ENSG00000260526 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260526 Gene

Function for ENSG00000260526 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260526 Gene

Localization for ENSG00000260526 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260526 Gene

Pathways & Interactions for ENSG00000260526 Gene

PathCards logo

SuperPathways for ENSG00000260526 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260526 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260526 Gene

Drugs & Compounds for ENSG00000260526 Gene

No Compound Related Data Available

Transcripts for ENSG00000260526 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260526 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003645FA_9606 lncRNA 2036 3

Ensembl: ENST00000562919 (view in UCSC) ,

LNCipedia: lnc-TIFA-1:1,

NONCODE: NONHSAT097840.2,

URS0000D5A527_9606 lncRNA 2032 1

LNCipedia: lnc-TIFA-1:2,

ENSG00000260526 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260526 Gene

No ASD Table

Relevant External Links for ENSG00000260526 Gene

GeneLoc Exon Structure for
ENSG00000260526

No data available for mRNA/cDNA for ENSG00000260526 Gene

Expression for ENSG00000260526 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260526 Gene

genes like me logo Genes that share expression patterns with ENSG00000260526: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260526 Gene

Orthologs for ENSG00000260526 Gene

Evolution for ENSG00000260526 Gene

ENSEMBL:
Gene Tree for ENSG00000260526 (if available)
TreeFam:
Gene Tree for ENSG00000260526 (if available)

No data available for Orthologs for ENSG00000260526 Gene

Paralogs for ENSG00000260526 Gene

No data available for Paralogs for ENSG00000260526 Gene

Variants for ENSG00000260526 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260526 Gene

Disorders for ENSG00000260526 Gene

Additional Disease Information for ENSG00000260526

No disorders were found for ENSG00000260526 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260526 Gene

Publications for ENSG00000260526 Gene

No publications were found for ENSG00000260526 Gene.

No data available for Mastermind for ENSG00000260526 Gene

Products for ENSG00000260526 Gene

Sources for ENSG00000260526 Gene