Aliases for ENSG00000260507 Gene

Subcategory (RNA class) for ENSG00000260507 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ENSG00000260507 Gene

  • Novel Transcript 5
  • NONHSAG020389.2 91
  • HSALNG0113690 164
  • Lnc-PRDM7-1 165
  • AC133919.1 5
  • 5MWI_A 167

External Ids for ENSG00000260507 Gene

Previous GeneCards Identifiers for ENSG00000260507 Gene

  • GC16M090171

Summaries for ENSG00000260507 Gene

GeneCards Summary for ENSG00000260507 Gene

ENSG00000260507 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260507 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260507 Gene

Genomics for ENSG00000260507 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260507 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J090106 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 600.7 -1.0 -985 2.2 CTCF ZBTB33 REST CTBP1 BCOR ZNF592 NRF1 ZEB2 ATF7 ATF1 ENSG00000260507 LOC105376786 FAM157C DEF8 CDK10 piR-58578-002 PRDM7
GH16J090104 Promoter 0.3 Ensembl 600.7 +1.8 1815 0.2 ENSG00000260507 LOC105376786 FAM157C piR-46584-001 PRDM7
GH16J090098 Promoter 1 EPDnew Ensembl 0.7 +3.4 3415 1.4 SCRT2 NFE2 ZNF316 FOS EMSY FAM157C piR-46584-001 ENSG00000260507 LOC105376786 PRDM7
GH16J090110 Promoter 0.3 Ensembl 0.7 -3.7 -3685 0.4 ENSG00000260507 FAM157C piR-58578-002 PRDM7
GH16J090103 Promoter 0.3 Ensembl 0.7 +2.4 2415 0.2 FAM157C LOC105376786 piR-46584-001 ENSG00000260507 PRDM7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260507 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260507 Gene

Genomic Locations for ENSG00000260507 Gene
chr16:90,101,206-90,106,316
(GRCh38/hg38)
Size:
5,111 bases
Orientation:
Minus strand
chr16:90,171,503-90,172,724
(GRCh37/hg19)
Size:
1,222 bases
Orientation:
Minus strand

Genomic View for ENSG00000260507 Gene

Genes around ENSG00000260507 on UCSC Golden Path with GeneCards custom track
ENSG00000260507 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260507 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260507 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260507 Gene

Proteins for ENSG00000260507 Gene

Post-translational modifications for ENSG00000260507 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260507 Gene

Domains & Families for ENSG00000260507 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260507 Gene

Function for ENSG00000260507 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260507 Gene

Localization for ENSG00000260507 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260507 Gene

Pathways & Interactions for ENSG00000260507 Gene

PathCards logo

SuperPathways for ENSG00000260507 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260507 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260507 Gene

Drugs & Compounds for ENSG00000260507 Gene

No Compound Related Data Available

Transcripts for ENSG00000260507 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260507 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000235A8D_9606 lncRNA 416 4

Ensembl: ENST00000562203 (view in UCSC) ,

LncBook: HSALNT0235607,

LNCipedia: lnc-PRDM7-1:1,

NONCODE: NONHSAT144644.2,

URS00008B6BC2_9606 lncRNA 3062 2

LNCipedia: lnc-PRDM7-1:2,

NONCODE: NONHSAT144642.2,

URS0000B21DD0_9606 misc_RNA 26 1

PDBe: 5MWI_A,

ENSG00000260507 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260507 Gene

No ASD Table

Relevant External Links for ENSG00000260507 Gene

GeneLoc Exon Structure for
ENSG00000260507

No data available for mRNA/cDNA for ENSG00000260507 Gene

Expression for ENSG00000260507 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260507 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260507 Gene

This gene is overexpressed in Whole Blood (x34.1).
genes like me logo Genes that share expression patterns with ENSG00000260507: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260507 Gene

Orthologs for ENSG00000260507 Gene

Evolution for ENSG00000260507 Gene

ENSEMBL:
Gene Tree for ENSG00000260507 (if available)
TreeFam:
Gene Tree for ENSG00000260507 (if available)

No data available for Orthologs for ENSG00000260507 Gene

Paralogs for ENSG00000260507 Gene

No data available for Paralogs for ENSG00000260507 Gene

Variants for ENSG00000260507 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260507 Gene

Disorders for ENSG00000260507 Gene

No disorders were found for ENSG00000260507 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260507 Gene

Publications for ENSG00000260507 Gene

No publications were found for ENSG00000260507 Gene.

No data available for Mastermind for ENSG00000260507 Gene

Products for ENSG00000260507 Gene

Sources for ENSG00000260507 Gene