Aliases for ENSG00000260473 Gene

Subcategory (RNA class) for ENSG00000260473 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000260473 Gene

  • Novel Transcript 5
  • HSALNG0091107 169
  • NONHSAG011168 94
  • Lnc-SCN8A-2 170
  • AC068987.3 5

External Ids for ENSG00000260473 Gene

Previous GeneCards Identifiers for ENSG00000260473 Gene

  • GC12P052217

Summaries for ENSG00000260473 Gene

GeneCards Summary for ENSG00000260473 Gene

ENSG00000260473 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260473 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260473 Gene

Genomics for ENSG00000260473 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260473 Gene

Promoters and enhancers for ENSG00000260473 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J051813 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 750.6 -0.4 -442 1.6 CTCF RAD21 POLR2A ZFX EZH2 NR2C2 YY1 HNF4A SIN3A NRF1 ENSG00000260473 ENSG00000284730 GALNT6 SLC4A8 ENSG00000260122
GH12J051814 Promoter 0.3 Ensembl 750.6 -1.5 -1542 0.2 ENSG00000260473 ENSG00000284730 GALNT6 SLC4A8 ENSG00000260122
GH12J051958 Enhancer 0.9 ENCODE dbSUPER 6.1 +146.3 146299 5.2 HLF ELF3 SP1 CEBPG PRDM1 ZNF644 KAT8 PKNOX1 CEBPA RXRA RNU6-574P NR4A1 GRASP ENSG00000260473 lnc-ACVRL1-2 lnc-FIGNL2-12 ACVR1B
GH12J051975 Enhancer 1 ENCODE dbSUPER 4.7 +162.0 162006 2.5 LCORL RBPJ SMARCE1 CREB1 MIXL1 ZNF362 HLF RAD21 ZNF652 ELF3 ACVR1B GRASP NR4A1 ACVRL1 ANKRD33 ENSG00000260473 lnc-GRASP-1 lnc-FIGNL2-12
GH12J051994 Enhancer 0.7 Ensembl ENCODE dbSUPER 4.9 +180.1 180066 1.4 NFIB NFIC ZBTB33 lnc-FIGNL2-10 piR-58348 ENSG00000260473 ACVR1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260473 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260473 Gene

Genomic Locations for ENSG00000260473 Gene
chr12:51,815,043-51,842,106
(GRCh38/hg38)
Size:
27,064 bases
Orientation:
Plus strand
chr12:52,217,287-52,229,280
(GRCh37/hg19)
Size:
11,994 bases
Orientation:
Plus strand

Genomic View for ENSG00000260473 Gene

Genes around ENSG00000260473 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260473 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260473 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260473 Gene

Proteins for ENSG00000260473 Gene

Post-translational modifications for ENSG00000260473 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260473 Gene

Domains & Families for ENSG00000260473 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260473 Gene

Function for ENSG00000260473 Gene

Phenotypes From GWAS Catalog for ENSG00000260473 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260473 Gene

Localization for ENSG00000260473 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260473 Gene

Pathways & Interactions for ENSG00000260473 Gene

PathCards logo

SuperPathways for ENSG00000260473 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260473 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000260473 Gene

Drugs & Compounds for ENSG00000260473 Gene

No Compound Related Data Available

Transcripts for ENSG00000260473 Gene

mRNA/cDNA for ENSG00000260473 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(2) LNCipedia transcripts :
(6) NONCODE transcripts :
(6) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260473 Gene

No ASD Table

Relevant External Links for ENSG00000260473 Gene

GeneLoc Exon Structure for
ENSG00000260473

Expression for ENSG00000260473 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000260473 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260473 Gene

This gene is overexpressed in Testis (x21.5), Pituitary (x4.6), and Kidney - Cortex (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000260473: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260473 Gene

Orthologs for ENSG00000260473 Gene

Evolution for ENSG00000260473 Gene

ENSEMBL:
Gene Tree for ENSG00000260473 (if available)
TreeFam:
Gene Tree for ENSG00000260473 (if available)

No data available for Orthologs for ENSG00000260473 Gene

Paralogs for ENSG00000260473 Gene

No data available for Paralogs for ENSG00000260473 Gene

Variants for ENSG00000260473 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260473 Gene

Disorders for ENSG00000260473 Gene

No disorders were found for ENSG00000260473 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260473 Gene

Publications for ENSG00000260473 Gene

No publications were found for ENSG00000260473 Gene.

No data available for External Links for ENSG00000260473 Gene

Products for ENSG00000260473 Gene

Sources for ENSG00000260473 Gene