Aliases for ENSG00000260473 Gene

Subcategory (RNA class) for ENSG00000260473 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260473 Gene

  • Novel Transcript 5
  • NONHSAG011168.2 91
  • HSALNG0091107 164
  • Lnc-SCN8A-2 165
  • AC068987.2 5

External Ids for ENSG00000260473 Gene

Previous GeneCards Identifiers for ENSG00000260473 Gene

  • GC12P052217

Summaries for ENSG00000260473 Gene

GeneCards Summary for ENSG00000260473 Gene

ENSG00000260473 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260473 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260473 Gene

Genomics for ENSG00000260473 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260473 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J051813 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 600.7 +0.2 217 1.6 KDM1A CTCF RBFOX2 EZH2 ZFX TAF1 RAD21 UBTF NR2C2 YY1 ENSG00000260473 TMDD1 GALNT6 SLC4A8 SCN8A
GH12J051811 Enhancer 0.5 Ensembl 600.7 -2.0 -1983 1.6 ATF7 BCOR SPI1 ZNF768 ATF3 ZMYM3 ENSG00000260122 ENSG00000260473 SLC4A8 GALNT6 TMDD1 lnc-SCN8A-1 SCN8A
GH12J051814 Promoter 0.3 Ensembl 600.7 -0.9 -883 0.2 ENSG00000260473 TMDD1 GALNT6 SLC4A8 ENSG00000260122 SCN8A
GH12J051958 Enhancer 0.9 ENCODE dbSUPER 6.1 +147.0 146958 5.2 GATAD2A RCOR2 PRDM1 PKNOX1 SP1 CEBPA ZNF766 CEBPB ESR1 ZSCAN5C RNU6-574P NR4A1 TAMALIN ENSG00000260473 lnc-ACVRL1-2 lnc-FIGNL2-12 ACVR1B
GH12J051975 Enhancer 1 ENCODE dbSUPER 4.7 +162.7 162665 2.5 GATAD2A IKZF1 NFKBIZ JUND GABPA RXRB REST SP1 HDAC1 CEBPA ACVR1B TAMALIN NR4A1 ACVRL1 ANKRD33 ENSG00000260473 lnc-GRASP-1 lnc-FIGNL2-12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260473 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260473 Gene

Genomic Locations for ENSG00000260473 Gene
chr12:51,814,384-51,842,106
(GRCh38/hg38)
Size:
27,723 bases
Orientation:
Plus strand
chr12:52,217,287-52,229,280
(GRCh37/hg19)
Size:
11,994 bases
Orientation:
Plus strand

Genomic View for ENSG00000260473 Gene

Genes around ENSG00000260473 on UCSC Golden Path with GeneCards custom track
ENSG00000260473 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260473 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260473 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260473 Gene

Proteins for ENSG00000260473 Gene

Post-translational modifications for ENSG00000260473 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260473 Gene

Domains & Families for ENSG00000260473 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260473 Gene

Function for ENSG00000260473 Gene

Phenotypes From GWAS Catalog for ENSG00000260473 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260473 Gene

Localization for ENSG00000260473 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260473 Gene

Pathways & Interactions for ENSG00000260473 Gene

PathCards logo

SuperPathways for ENSG00000260473 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260473 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260473 Gene

Drugs & Compounds for ENSG00000260473 Gene

No Compound Related Data Available

Transcripts for ENSG00000260473 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260473 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000025F82D_9606 lncRNA 1027 4

Ensembl: ENST00000567167 (view in UCSC) ,

LncBook: HSALNT0189051,

LNCipedia: lnc-SCN8A-2:10,

NONCODE: NONHSAT028294.2,

URS0000A856AA_9606 lncRNA 1195 3

Ensembl: ENST00000637934 (view in UCSC) ,

LncBook: HSALNT0189046,

LNCipedia: lnc-SCN8A-2:12,

URS00008C2235_9606 lncRNA 2298 2

LncBook: HSALNT0189048,

NONCODE: NONHSAT028292.2,

URS00008BE6AB_9606 lncRNA 717 2

LncBook: HSALNT0189044,

NONCODE: NONHSAT028290.2,

URS00008B6AB2_9606 lncRNA 591 2

LncBook: HSALNT0189043,

NONCODE: NONHSAT028289.2,

ENSG00000260473 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260473 Gene

No ASD Table

Relevant External Links for ENSG00000260473 Gene

GeneLoc Exon Structure for
ENSG00000260473

No data available for mRNA/cDNA for ENSG00000260473 Gene

Expression for ENSG00000260473 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260473 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260473 Gene

This gene is overexpressed in Testis (x21.5), Pituitary (x4.6), and Kidney - Cortex (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000260473: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260473 Gene

Orthologs for ENSG00000260473 Gene

Evolution for ENSG00000260473 Gene

ENSEMBL:
Gene Tree for ENSG00000260473 (if available)
TreeFam:
Gene Tree for ENSG00000260473 (if available)

No data available for Orthologs for ENSG00000260473 Gene

Paralogs for ENSG00000260473 Gene

No data available for Paralogs for ENSG00000260473 Gene

Variants for ENSG00000260473 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260473 Gene

Disorders for ENSG00000260473 Gene

No disorders were found for ENSG00000260473 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260473 Gene

Publications for ENSG00000260473 Gene

No publications were found for ENSG00000260473 Gene.

No data available for Mastermind for ENSG00000260473 Gene

Products for ENSG00000260473 Gene

Sources for ENSG00000260473 Gene