Aliases for ENSG00000260441 Gene

Subcategory (RNA class) for ENSG00000260441 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260441 Gene

  • Novel Transcript, Antisense To PLA2G15 5
  • NONHSAG019788.2 91
  • HSALNG0112270 164
  • Lnc-ESRP2-4 165
  • AC020978.2 5

External Ids for ENSG00000260441 Gene

Previous GeneCards Identifiers for ENSG00000260441 Gene

  • GC16M068290

Summaries for ENSG00000260441 Gene

GeneCards Summary for ENSG00000260441 Gene

ENSG00000260441 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260441 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260441 Gene

Genomics for ENSG00000260441 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260441 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J068263 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.5 -546 3.6 CEBPG HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 TFE3 LEF1 SLC7A6 ENSG00000260441 PRMT7 ZFP90 CTCF SNTB2 ZDHHC1 SLC12A4 DUS2 TSNAXIP1
GH16J068244 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +18.5 18454 3.6 SP1 HNRNPL CREB1 ZNF629 NFKBIZ ZNF692 POLR2A TARDBP JUND DDX20 PLA2G15 PRMT7 THAP11 SLC12A4 ENSG00000260441 SLC7A6 L13708-003
GH16J068256 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +6.2 6165 3.1 HNRNPL GATAD2A ZBTB33 TFE3 RCOR2 RXRB IRF2 POLR2A GABPA KMT2B PRMT7 DUS2 ENSG00000260441 SLC7A6 PLA2G15 L13708-003
GH16J068261 Enhancer 0.8 ENCODE 0.7 +2.7 2722 0.2 GATAD2A CTCF RXRB REST RAD21 TRIM22 SCRT2 CTBP1 RUNX3 GATAD2B PRMT7 ENSG00000260441 SLC7A6 PLA2G15 L13708-003
GH16J068250 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 +12.4 12376 2.5 SCRT2 ZNF121 PRMT7 DUS2 PLA2G15 ENSG00000260441 SLC7A6 L13708-003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260441 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260441 Gene

Genomic Locations for ENSG00000260441 Gene
chr16:68,256,162-68,264,455
(GRCh38/hg38)
Size:
8,294 bases
Orientation:
Minus strand
chr16:68,290,065-68,294,346
(GRCh37/hg19)
Size:
4,282 bases
Orientation:
Minus strand

Genomic View for ENSG00000260441 Gene

Genes around ENSG00000260441 on UCSC Golden Path with GeneCards custom track
ENSG00000260441 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260441 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260441 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260441 Gene

Proteins for ENSG00000260441 Gene

Post-translational modifications for ENSG00000260441 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260441 Gene

Domains & Families for ENSG00000260441 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260441 Gene

Function for ENSG00000260441 Gene

Phenotypes From GWAS Catalog for ENSG00000260441 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260441 Gene

Localization for ENSG00000260441 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260441 Gene

Pathways & Interactions for ENSG00000260441 Gene

PathCards logo

SuperPathways for ENSG00000260441 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260441 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260441 Gene

Drugs & Compounds for ENSG00000260441 Gene

No Compound Related Data Available

Transcripts for ENSG00000260441 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260441 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001B5D78_9606 lncRNA 288 4

Ensembl: ENST00000569843 (view in UCSC) ,

LncBook: HSALNT0232769,

LNCipedia: lnc-ESRP2-4:8,

NONCODE: NONHSAT143233.2,

URS0000539944_9606 lncRNA 457 3

Ensembl: ENST00000563175 (view in UCSC) ,

LNCipedia: lnc-ESRP2-4:7,

NONCODE: NONHSAT143234.2,

URS00009BDF16_9606 lncRNA 944 2

LNCipedia: lnc-ESRP2-4:5,

NONCODE: NONHSAT143236.2,

URS00008B5B7B_9606 lncRNA 902 2

LNCipedia: lnc-ESRP2-4:6,

NONCODE: NONHSAT143235.2,

URS0000D58026_9606 lncRNA 7296 1

LNCipedia: lnc-ESRP2-4:1,

ENSG00000260441 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260441 Gene

No ASD Table

Relevant External Links for ENSG00000260441 Gene

GeneLoc Exon Structure for
ENSG00000260441

No data available for mRNA/cDNA for ENSG00000260441 Gene

Expression for ENSG00000260441 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260441 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260441 Gene

This gene is overexpressed in Muscle - Skeletal (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000260441: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260441 Gene

Orthologs for ENSG00000260441 Gene

Evolution for ENSG00000260441 Gene

ENSEMBL:
Gene Tree for ENSG00000260441 (if available)
TreeFam:
Gene Tree for ENSG00000260441 (if available)

No data available for Orthologs for ENSG00000260441 Gene

Paralogs for ENSG00000260441 Gene

No data available for Paralogs for ENSG00000260441 Gene

Variants for ENSG00000260441 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260441 Gene

Disorders for ENSG00000260441 Gene

No disorders were found for ENSG00000260441 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260441 Gene

Publications for ENSG00000260441 Gene

No publications were found for ENSG00000260441 Gene.

No data available for Mastermind for ENSG00000260441 Gene

Products for ENSG00000260441 Gene

Sources for ENSG00000260441 Gene