Aliases for ENSG00000260390 Gene

Subcategory (RNA class) for ENSG00000260390 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000260390 Gene

  • Novel Transcript 5
  • NONHSAG051967.2 91
  • HSALNG0070569 164
  • AL360014.1 5
  • Lnc-IFNK-3 165

External Ids for ENSG00000260390 Gene

Summaries for ENSG00000260390 Gene

GeneCards Summary for ENSG00000260390 Gene

ENSG00000260390 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260390 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260390 Gene

Genomics for ENSG00000260390 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260390 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J027662 Enhancer 0.6 Ensembl ENCODE 4.9 -165.0 -164984 3 ZSCAN29 USF1 MYC ZFHX2 FOXA1 EGR2 LOC105376002 ENSG00000260390 LOC107987058 C9orf72
GH09J027643 Enhancer 0.5 Ensembl dbSUPER 5.7 -183.5 -183475 3.6 POLR2A SMARCA4 EQTN ENSG00000260390 LOC107987058 LOC105376002 C9orf72
GH09J027658 Enhancer 0.4 FANTOM5 5.3 -170.1 -170148 0.3 POLR2A EZH2 C9orf72 ENSG00000260390 LOC105376002 LOC107987058
GH09J027672 Enhancer 0.2 Ensembl 5.4 -155.2 -155176 3.4 EQTN ENSG00000260390 piR-39981 LOC105376002 RF00994-1116 C9orf72
GH09J027670 Enhancer 0.2 Ensembl 5.2 -157.9 -157876 1.2 ENSG00000260390 RF00994-1116 LOC105376002 piR-39981 C9orf72
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260390 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260390 Gene

Genomic Locations for ENSG00000260390 Gene
chr9:27,829,276-27,844,482
(GRCh38/hg38)
Size:
15,207 bases
Orientation:
Plus strand
chr9:27,829,274-27,844,479
(GRCh37/hg19)
Size:
15,206 bases
Orientation:
Plus strand

Genomic View for ENSG00000260390 Gene

Genes around ENSG00000260390 on UCSC Golden Path with GeneCards custom track
ENSG00000260390 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260390 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260390 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260390 Gene

Proteins for ENSG00000260390 Gene

Post-translational modifications for ENSG00000260390 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260390 Gene

Domains & Families for ENSG00000260390 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260390 Gene

Function for ENSG00000260390 Gene

Phenotypes From GWAS Catalog for ENSG00000260390 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260390 Gene

Localization for ENSG00000260390 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260390 Gene

Pathways & Interactions for ENSG00000260390 Gene

PathCards logo

SuperPathways for ENSG00000260390 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260390 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260390 Gene

Drugs & Compounds for ENSG00000260390 Gene

No Compound Related Data Available

Transcripts for ENSG00000260390 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260390 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005FE94B_9606 lncRNA 2084 3

Ensembl: ENST00000562922 (view in UCSC) ,

LNCipedia: lnc-IFNK-3:1,

NONCODE: NONHSAT130621.2,

URS00009BC729_9606 lncRNA 2084 2

LncBook: HSALNT0147804,

NONCODE: NONHSAT219367.1,

ENSG00000260390 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260390 Gene

No ASD Table

Relevant External Links for ENSG00000260390 Gene

GeneLoc Exon Structure for
ENSG00000260390

No data available for mRNA/cDNA for ENSG00000260390 Gene

Expression for ENSG00000260390 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260390 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260390 Gene

This gene is overexpressed in Testis (x10.6) and Colon - Transverse (x6.8).
genes like me logo Genes that share expression patterns with ENSG00000260390: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260390 Gene

Orthologs for ENSG00000260390 Gene

Evolution for ENSG00000260390 Gene

ENSEMBL:
Gene Tree for ENSG00000260390 (if available)
TreeFam:
Gene Tree for ENSG00000260390 (if available)

No data available for Orthologs for ENSG00000260390 Gene

Paralogs for ENSG00000260390 Gene

No data available for Paralogs for ENSG00000260390 Gene

Variants for ENSG00000260390 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260390 Gene

Disorders for ENSG00000260390 Gene

Additional Disease Information for ENSG00000260390

No disorders were found for ENSG00000260390 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260390 Gene

Publications for ENSG00000260390 Gene

No publications were found for ENSG00000260390 Gene.

No data available for Mastermind for ENSG00000260390 Gene

Products for ENSG00000260390 Gene

Sources for ENSG00000260390 Gene