Aliases for ENSG00000260377 Gene

Subcategory (RNA class) for ENSG00000260377 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000260377 Gene

  • Novel Transcript 5
  • NONHSAG036803.2 91
  • Lnc-DCUN1D1-3 165
  • AC083801.2 5

External Ids for ENSG00000260377 Gene

Previous GeneCards Identifiers for ENSG00000260377 Gene

  • GC03M182457

Summaries for ENSG00000260377 Gene

GeneCards Summary for ENSG00000260377 Gene

ENSG00000260377 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260377 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260377 Gene

Genomics for ENSG00000260377 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000260377 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J182738 Enhancer 1.1 Ensembl ENCODE 615.8 +1.2 1163 3.3 CREB1 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 TARDBP JUND PRDM1 MTA2 ENSG00000260377 ATP11B ENSG00000273261 HSALNG0031110
GH03J182715 Enhancer 1.2 Ensembl ENCODE dbSUPER 6.6 +24.4 24359 2.3 PRDM10 RFX1 LEF1 IKZF1 FOXA1 PRDM1 MTA2 MTA1 IKZF2 BRD9 ATP11B ENSG00000240063 ENSG00000260377 HSALNG0031110
GH03J182725 Enhancer 0.9 ENCODE CraniofacialAtlas 7.5 +15.0 14962 1.7 TEAD4 PRDM10 RFX1 IKZF1 DPF2 HDAC1 SOX6 TCF12 EP300 ZNF766 ATP11B ENSG00000240063 LAMP3 ENSG00000260377 HSALNG0031110
GH03J182710 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.5 +29.2 29247 2.4 GATAD2A CTCF KDM1A RCOR2 SP1 TRIM22 CEBPA SOX13 HMBOX1 HDAC2 ATP11B ENSG00000240063 ENSG00000260377 HSALNG0031110 SOX2
GH03J182729 Enhancer 0.8 ENCODE dbSUPER 0.4 +10.8 10840 0.2 RELA IKZF2 TRIM22 EED DPF2 RELB RUNX3 BCL11A ARNT NBN ATP11B ENSG00000240063 ENSG00000260377 HSALNG0031110
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260377 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000260377 Gene

Genomic Locations for ENSG00000260377 Gene
chr3:182,739,669-182,740,848
(GRCh38/hg38)
Size:
1,180 bases
Orientation:
Minus strand
chr3:182,457,457-182,458,636
(GRCh37/hg19)
Size:
1,180 bases
Orientation:
Minus strand

Genomic View for ENSG00000260377 Gene

Genes around ENSG00000260377 on UCSC Golden Path with GeneCards custom track
ENSG00000260377 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000260377 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260377 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260377 Gene

Proteins for ENSG00000260377 Gene

Post-translational modifications for ENSG00000260377 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260377 Gene

Domains & Families for ENSG00000260377 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260377 Gene

Function for ENSG00000260377 Gene

Phenotypes From GWAS Catalog for ENSG00000260377 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260377 Gene

Localization for ENSG00000260377 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260377 Gene

Pathways & Interactions for ENSG00000260377 Gene

PathCards logo

SuperPathways for ENSG00000260377 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000260377 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260377 Gene

Drugs & Compounds for ENSG00000260377 Gene

No Compound Related Data Available

Transcripts for ENSG00000260377 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000260377 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000029DB5_9606 lncRNA 1180 3

Ensembl: ENST00000565024 (view in UCSC) ,

LNCipedia: lnc-DCUN1D1-3:1,

NONCODE: NONHSAT093621.2,

ENSG00000260377 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260377 Gene

No ASD Table

Relevant External Links for ENSG00000260377 Gene

GeneLoc Exon Structure for
ENSG00000260377

No data available for mRNA/cDNA for ENSG00000260377 Gene

Expression for ENSG00000260377 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260377 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260377 Gene

This gene is overexpressed in Esophagus - Mucosa (x11.1), Vagina (x11.1), Skin - Not Sun Exposed (Suprapubic) (x6.7), Cervix - Ectocervix (x6.4), Skin - Sun Exposed (Lower leg) (x5.4), and Minor Salivary Gland (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000260377: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260377 Gene

Orthologs for ENSG00000260377 Gene

Evolution for ENSG00000260377 Gene

ENSEMBL:
Gene Tree for ENSG00000260377 (if available)
TreeFam:
Gene Tree for ENSG00000260377 (if available)

No data available for Orthologs for ENSG00000260377 Gene

Paralogs for ENSG00000260377 Gene

No data available for Paralogs for ENSG00000260377 Gene

Variants for ENSG00000260377 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260377 Gene

Disorders for ENSG00000260377 Gene

Additional Disease Information for ENSG00000260377

No disorders were found for ENSG00000260377 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000260377 Gene

Publications for ENSG00000260377 Gene

No publications were found for ENSG00000260377 Gene.

No data available for Mastermind for ENSG00000260377 Gene

Products for ENSG00000260377 Gene

Sources for ENSG00000260377 Gene