Aliases for ENSG00000260352 Gene

Subcategory (RNA class) for ENSG00000260352 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000260352 Gene

  • Novel Transcript, Antisense To SMG1 5
  • NONHSAG018773 92
  • AC092287.1 5
  • Lnc-TMC7-1 168

External Ids for ENSG00000260352 Gene

Summaries for ENSG00000260352 Gene

GeneCards Summary for ENSG00000260352 Gene

ENSG00000260352 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260352 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260352 Gene

Genomics for ENSG00000260352 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260352 Gene

Promoters and enhancers for ENSG00000260352 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J018923 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -1.2 -1234 5.1 FOXK2 ZBTB40 EP300 NRF1 POLR2G USF1 SP1 PHF8 ZFX ZNF639 SMG1 ENSG00000260352 lnc-ARL6IP1-6 ENSG00000205746 ARL6IP1 NPIPA8 PKD1P5 RF00017-1996
GH16J018936 Enhancer 1.1 Ensembl ENCODE 0.4 +10.3 10274 0.8 EP300 FOXK2 NCOR1 KDM6A TCF7 FOXA1 ZBTB25 CTBP1 SKI TEAD1 ARL6IP1 ENSG00000260352 TMC7
GH16J018945 Enhancer 1 ENCODE 0.4 +19.5 19477 1.3 CTCF EP300 JUND REST MEF2C ZBTB25 MYC SKI TRIM22 TAF9B NPIPA9 PKD1P5 NPIPA8 ENSG00000205746 TMC7 ARL6IP1 COQ7 ENSG00000260352
GH16J018933 Enhancer 0.8 ENCODE 0.4 +5.5 5521 0.4 NCOR1 POLR2A SKI TEAD1 KMT2B KLF9 FOXA2 SAP130 ZNF205 MIER3 ENSG00000260352 TMC7
GH16J018931 Enhancer 0.6 ENCODE 0.4 +5.1 5091 0.4 RELA KMT2B SAP130 SMARCA5 ZGPAT EBF1 IKZF1 ZNF217 ARID4B ATF7 ENSG00000260352 TMC7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260352 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260352 Gene

Genomic Locations for ENSG00000260352 Gene
chr16:18,926,863-18,937,043
(GRCh38/hg38)
Size:
10,181 bases
Orientation:
Plus strand
chr16:18,938,185-18,948,365
(GRCh37/hg19)
Size:
10,181 bases
Orientation:
Plus strand

Genomic View for ENSG00000260352 Gene

Genes around ENSG00000260352 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260352 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260352 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000260352 Gene

Proteins for ENSG00000260352 Gene

Post-translational modifications for ENSG00000260352 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260352 Gene

Domains & Families for ENSG00000260352 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260352 Gene

Function for ENSG00000260352 Gene

Phenotypes From GWAS Catalog for ENSG00000260352 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260352 Gene

Localization for ENSG00000260352 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260352 Gene

Pathways & Interactions for ENSG00000260352 Gene

PathCards logo

SuperPathways for ENSG00000260352 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260352 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260352 Gene

Drugs & Compounds for ENSG00000260352 Gene

No Compound Related Data Available

Transcripts for ENSG00000260352 Gene

mRNA/cDNA for ENSG00000260352 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260352 Gene

No ASD Table

Relevant External Links for ENSG00000260352 Gene

GeneLoc Exon Structure for
ENSG00000260352

Expression for ENSG00000260352 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260352 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000260352 Gene

This gene is overexpressed in Colon - Transverse (x4.7) and Kidney - Cortex (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000260352: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260352 Gene

Orthologs for ENSG00000260352 Gene

Evolution for ENSG00000260352 Gene

ENSEMBL:
Gene Tree for ENSG00000260352 (if available)
TreeFam:
Gene Tree for ENSG00000260352 (if available)

No data available for Orthologs for ENSG00000260352 Gene

Paralogs for ENSG00000260352 Gene

No data available for Paralogs for ENSG00000260352 Gene

Variants for ENSG00000260352 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260352 Gene

Disorders for ENSG00000260352 Gene

No disorders were found for ENSG00000260352 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260352 Gene

Publications for ENSG00000260352 Gene

No publications were found for ENSG00000260352 Gene.

No data available for Mastermind for ENSG00000260352 Gene

Products for ENSG00000260352 Gene

Sources for ENSG00000260352 Gene