ENSG00000260289 Gene (RNA Gene)

 

GC16M007888
GIFtS:
8

Aliases for ENSG00000260289 Gene

Subcategory (RNA class) for ENSG00000260289 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000260289 Gene

  • Novel Transcript 5
  • NONHSAG018502 92
  • Lnc-TMEM114-8 168
  • HSALNG0109362 167
  • Lnc-TMEM114-3 168
  • AC093515.1 5

External Ids for ENSG00000260289 Gene

Previous GeneCards Identifiers for ENSG00000260289 Gene

  • GC16M007938

Summaries for ENSG00000260289 Gene

GeneCards Summary for ENSG00000260289 Gene

ENSG00000260289 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000260289 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000260289 Gene

Genomics for ENSG00000260289 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000260289 Gene

Promoters and enhancers for ENSG00000260289 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J008113 Enhancer 0.8 FANTOM5 500.7 -0.5 -515 0.4 GTF2E2 TRIM25 NCOR1 NFRKB RELA ZNF592 GTF2A2 KLF13 FOSL1 EHMT2 ENSG00000260289 LOC105371070 piR-43583-195 piR-44276-006 piR-41399-163 piR-36393-191 piR-50308-222 piR-53562-132 piR-55281-220 LINC02152
GH16J008109 Enhancer 0.9 FANTOM5 0.7 +3.3 3266 0.3 ZBTB5 TAF7 AFF1 TOE1 MYC CTBP1 NFRKB TAF9B GTF2F1 KDM5B ENSG00000260289 LOC105371070 lnc-RBFOX1-1
GH16J008087 Enhancer 1 Ensembl ENCODE 0.4 +24.9 24898 1.6 ZBTB5 AFF1 DNMT1 HES1 TSC22D4 MYC CTBP1 JUN TAF9B RBM25 LINC02152 lnc-RBFOX1-3 ENSG00000260289 LOC105371070 piR-48209-230
GH16J008083 Enhancer 0.5 VISTA UCNEbase 0.3 +29.1 29090 1.2 LINC02152 lnc-RBFOX1-3 piR-48209-230 LOC105371070 ENSG00000260289
GH16J008089 Enhancer 0.2 FANTOM5 0.4 +22.7 22715 0.1 lnc-RBFOX1-3 ENSG00000260289 LOC105371070 piR-48209-230
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000260289 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000260289 Gene

Genomic Locations for ENSG00000260289 Gene
chr16:7,878,799-8,112,756
(GRCh38/hg38)
Size:
233,958 bases
Orientation:
Minus strand
chr16:7,938,491-7,944,397
(GRCh37/hg19)
Size:
5,907 bases
Orientation:
Minus strand

Genomic View for ENSG00000260289 Gene

Genes around ENSG00000260289 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000260289 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000260289 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000260289 Gene

Proteins for ENSG00000260289 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000260289 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000260289 Gene

Domains & Families for ENSG00000260289 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000260289 Gene

Function for ENSG00000260289 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000260289 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000260289 Gene

Localization for ENSG00000260289 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000260289 Gene

Pathways & Interactions for ENSG00000260289 Gene

PathCards logo

SuperPathways for ENSG00000260289 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000260289 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000260289 Gene

Drugs & Compounds for ENSG00000260289 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000260289 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000260289 Gene

7 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
4 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000260289 Gene

No ASD Table

Relevant External Links for ENSG00000260289 Gene

GeneLoc Exon Structure for
ENSG00000260289

Expression for ENSG00000260289 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000260289 Gene

mRNA expression in normal human tissues for ENSG00000260289 Gene
mRNA expression by GTEx for ENSG00000260289 Gene
genes like me logo Genes that share expression patterns with ENSG00000260289: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000260289 Gene

Orthologs for ENSG00000260289 Gene

Evolution for ENSG00000260289 Gene

ENSEMBL:
Gene Tree for ENSG00000260289 (if available)
TreeFam:
Gene Tree for ENSG00000260289 (if available)

No data available for Orthologs for ENSG00000260289 Gene

Paralogs for ENSG00000260289 Gene

No data available for Paralogs for ENSG00000260289 Gene

Variants for ENSG00000260289 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000260289 Gene

Disorders for ENSG00000260289 Gene

No disorders were found for ENSG00000260289 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000260289 Gene

Publications for ENSG00000260289 Gene

No publications were found for ENSG00000260289 Gene.

No data available for Mastermind for ENSG00000260289 Gene

Products for ENSG00000260289 Gene

Sources for ENSG00000260289 Gene